Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC090617.10-201ENST00000624308 134 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.81□□□□□ -1.96
COL28A1Q2UY09 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.81□□□□□ -1.96
COL28A1Q2UY09 MIR764-201ENST00000390811 85 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 FTH1P15-201ENST00000406984 280 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 RPS12P18-201ENST00000442381 270 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 GSTA11P-201ENST00000452866 669 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 AC013470.1-201ENST00000453438 462 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 snoU109.2-201ENST00000459316 135 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 RPL31P41-201ENST00000477967 372 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 AC132942.1-201ENST00000486753 483 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 AC083904.1-201ENST00000487828 231 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 SEM1P1-201ENST00000506694 209 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.81□□□□□ -1.96
COL28A1Q2UY09 RN7SKP43-201ENST00000516173 320 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 RNU6-1314P-201ENST00000517139 104 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 SCARNA11.3-201ENST00000517276 130 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.81□□□□□ -1.96
COL28A1Q2UY09 AC087854.1-201ENST00000519706 414 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.81□□□□□ -1.96
COL28A1Q2UY09 AL133241.1-201ENST00000556832 487 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 MIR5692C1-201ENST00000585309 91 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 AC008121.1-201ENST00000603244 268 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 RNU6-91P-201ENST00000607774 107 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 DUXAP9-208ENST00000622815 614 ntBASIC2.81□□□□□ -1.96
COL28A1Q2UY09 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 Y_RNA.72-201ENST00000362894 103 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 RNU6-78P-201ENST00000362897 107 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 RNU5E-7P-201ENST00000365290 117 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 RNU6-487P-201ENST00000365430 104 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 AL162578.1-201ENST00000406202 378 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 SNORD56-201ENST00000413522 71 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 AL591806.2-201ENST00000433122 173 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 AC107626.1-201ENST00000471084 183 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 MTCYBP40-201ENST00000509390 1135 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 RNA5SP76-201ENST00000516277 87 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 SNORA43.2-201ENST00000516652 128 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 AC009163.5-201ENST00000575421 637 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 AC123912.5-201ENST00000605470 343 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 uc_338.14-201ENST00000613162 166 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 AC138627.2-201ENST00000624202 601 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 MIR6733-201ENST00000635723 61 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 MIR3529-201ENST00000637713 78 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 U4.7-201ENST00000638126 106 ntBASIC2.8□□□□□ -1.96
COL28A1Q2UY09 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.8□□□□□ -1.96
COL28A1Q2UY09 RNU6-254P-201ENST00000363377 107 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 Y_RNA.373-201ENST00000365600 103 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AL356776.1-201ENST00000406574 447 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 SNORD88.1-201ENST00000408684 91 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.79□□□□□ -1.96
COL28A1Q2UY09 ATG3P1-201ENST00000419507 911 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AL513185.2-201ENST00000425543 193 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AL365400.1-201ENST00000431854 640 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 RPL23AP45-201ENST00000476406 468 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.79□□□□□ -1.96
COL28A1Q2UY09 TBCAP3-201ENST00000512475 312 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 RNU5B-3P-201ENST00000516601 115 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AC118273.2-201ENST00000532092 465 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AC020895.1-201ENST00000595362 272 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AL670379.10-201ENST00000604330 253 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AL670379.9-201ENST00000605428 253 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AC011890.2-201ENST00000613393 294 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 FAM157A-202ENST00000615155 405 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AC100810.6-201ENST00000638068 285 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 AC099654.14-201ENST00000638599 341 ntBASIC2.79□□□□□ -1.96
COL28A1Q2UY09 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL28A1Q2UY09 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.79□□□□□ -1.96
COL28A1Q2UY09 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
COL28A1Q2UY09 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 CASC19-280ENST00000642102 1351 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-37P-201ENST00000362692 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNA5SP99-201ENST00000364020 114 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-11P-201ENST00000364234 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-25P-201ENST00000383873 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-1-201ENST00000383898 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-128P-201ENST00000383976 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 Y_RNA.414-201ENST00000384011 101 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-48P-201ENST00000384161 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-36P-201ENST00000384172 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-4P-201ENST00000384205 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-5P-201ENST00000384238 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-3P-201ENST00000384314 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-16P-201ENST00000384385 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-843P-201ENST00000384454 104 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-15P-201ENST00000384534 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-2-201ENST00000384627 107 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms