Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC010265.1-201ENST00000513509 211 ntBASIC3.5□□□□□ -1.85
MSX2P35548 RNU6-572P-201ENST00000516724 80 ntBASIC3.5□□□□□ -1.85
MSX2P35548 AP002770.2-201ENST00000543613 532 ntBASIC3.5□□□□□ -1.85
MSX2P35548 AC011602.1-201ENST00000546484 331 ntBASIC3.5□□□□□ -1.85
MSX2P35548 AC136932.1-201ENST00000574771 208 ntBASIC3.5□□□□□ -1.85
MSX2P35548 VN1R85P-201ENST00000601587 426 ntBASIC3.5□□□□□ -1.85
MSX2P35548 MIR8058-201ENST00000615737 89 ntBASIC3.5□□□□□ -1.85
MSX2P35548 ZYXP1-201ENST00000617638 118 ntBASIC3.5□□□□□ -1.85
MSX2P35548 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
MSX2P35548 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.5□□□□□ -1.85
MSX2P35548 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
MSX2P35548 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.49□□□□□ -1.85
MSX2P35548 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.49□□□□□ -1.85
MSX2P35548 U3.13-201ENST00000364804 214 ntBASIC3.49□□□□□ -1.85
MSX2P35548 AP002088.1-201ENST00000382740 395 ntBASIC3.49□□□□□ -1.85
MSX2P35548 SNORA70C-201ENST00000384538 135 ntBASIC3.49□□□□□ -1.85
MSX2P35548 MIR23B-201ENST00000384832 97 ntBASIC3.49□□□□□ -1.85
MSX2P35548 MIR34A-201ENST00000385130 110 ntBASIC3.49□□□□□ -1.85
MSX2P35548 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSX2P35548 RPS26P8-201ENST00000393490 348 ntBASIC3.49□□□□□ -1.85
MSX2P35548 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.49□□□□□ -1.85
MSX2P35548 BX679664.1-201ENST00000434429 253 ntBASIC3.49□□□□□ -1.85
MSX2P35548 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.49□□□□□ -1.85
MSX2P35548 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.49□□□□□ -1.85
MSX2P35548 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.49□□□□□ -1.85
MSX2P35548 SSXP4-201ENST00000451349 245 ntBASIC3.49□□□□□ -1.85
MSX2P35548 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.49□□□□□ -1.85
MSX2P35548 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.49□□□□□ -1.85
MSX2P35548 U8.22-201ENST00000459141 133 ntBASIC3.49□□□□□ -1.85
MSX2P35548 AC034236.1-201ENST00000469891 373 ntBASIC3.49□□□□□ -1.85
MSX2P35548 RNU6-377P-201ENST00000515965 102 ntBASIC3.49□□□□□ -1.85
MSX2P35548 RNU5B-3P-201ENST00000516601 115 ntBASIC3.49□□□□□ -1.85
MSX2P35548 RRN3P3-201ENST00000549207 578 ntBASIC3.49□□□□□ -1.85
MSX2P35548 TGIF1P1-201ENST00000558095 802 ntBASIC3.49□□□□□ -1.85
MSX2P35548 MIR4300-201ENST00000581016 96 ntBASIC3.49□□□□□ -1.85
MSX2P35548 XIST_intron.1-201ENST00000619444 68 ntBASIC3.49□□□□□ -1.85
MSX2P35548 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.49□□□□□ -1.85
MSX2P35548 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSX2P35548 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.49□□□□□ -1.85
MSX2P35548 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSX2P35548 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.49□□□□□ -1.85
MSX2P35548 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
MSX2P35548 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSX2P35548 AL391987.6-201ENST00000305671 199 ntBASIC3.48□□□□□ -1.85
MSX2P35548 RNU6-78P-201ENST00000362897 107 ntBASIC3.48□□□□□ -1.85
MSX2P35548 Y_RNA.123-201ENST00000363338 102 ntBASIC3.48□□□□□ -1.85
MSX2P35548 RNY1-201ENST00000364228 113 ntBASIC3.48□□□□□ -1.85
MSX2P35548 RNU1-64P-201ENST00000365443 163 ntBASIC3.48□□□□□ -1.85
MSX2P35548 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
MSX2P35548 Y_RNA.462-201ENST00000384268 102 ntBASIC3.48□□□□□ -1.85
MSX2P35548 RNY3P4-201ENST00000384428 101 ntBASIC3.48□□□□□ -1.85
MSX2P35548 Y_RNA.555-201ENST00000384673 110 ntBASIC3.48□□□□□ -1.85
MSX2P35548 RNA5SP424-201ENST00000390988 115 ntBASIC3.48□□□□□ -1.85
MSX2P35548 RN7SKP53-201ENST00000411337 315 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.48□□□□□ -1.85
MSX2P35548 AC096920.1-201ENST00000423991 241 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AC098614.2-201ENST00000426040 255 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AC091286.1-201ENST00000431233 461 ntBASIC3.48□□□□□ -1.85
MSX2P35548 NDUFB4P6-201ENST00000436819 366 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AL139109.1-201ENST00000455491 297 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.48□□□□□ -1.85
MSX2P35548 SNORA31.6-201ENST00000516241 130 ntBASIC3.48□□□□□ -1.85
MSX2P35548 Y_RNA.700-201ENST00000516806 100 ntBASIC3.48□□□□□ -1.85
MSX2P35548 Y_RNA.713-201ENST00000517013 96 ntBASIC3.48□□□□□ -1.85
MSX2P35548 MIR2116-201ENST00000517221 80 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AC091144.1-201ENST00000519573 138 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.48□□□□□ -1.85
MSX2P35548 TRAV28-201ENST00000557548 323 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AC130289.1-201ENST00000577321 73 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AC060766.3-201ENST00000591442 263 ntBASIC3.48□□□□□ -1.85
MSX2P35548 RPL23AP78-201ENST00000599928 470 ntBASIC3.48□□□□□ -1.85
MSX2P35548 AC136601.2-201ENST00000604356 474 ntBASIC3.48□□□□□ -1.85
MSX2P35548 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.48□□□□□ -1.85
MSX2P35548 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSX2P35548 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.48□□□□□ -1.85
MSX2P35548 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
MSX2P35548 CUL1P1-201ENST00000509510 2425 ntBASIC3.48□□□□□ -1.85
MSX2P35548 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.47□□□□□ -1.85
MSX2P35548 AL136164.4-201ENST00000625013 2135 ntBASIC3.47□□□□□ -1.85
MSX2P35548 AF117829.1-206ENST00000621883 3802 ntBASIC3.47□□□□□ -1.85
MSX2P35548 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
MSX2P35548 AC091152.2-201ENST00000591628 2569 ntBASIC3.47□□□□□ -1.85
MSX2P35548 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
MSX2P35548 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
MSX2P35548 RNU5E-7P-201ENST00000365290 117 ntBASIC3.47□□□□□ -1.85
MSX2P35548 RNU6-72P-201ENST00000384285 79 ntBASIC3.47□□□□□ -1.85
MSX2P35548 RNU6-1197P-201ENST00000391183 107 ntBASIC3.47□□□□□ -1.85
MSX2P35548 MRPL35P1-201ENST00000404272 572 ntBASIC3.47□□□□□ -1.85
MSX2P35548 PPIAP31-201ENST00000405422 495 ntBASIC3.47□□□□□ -1.85
MSX2P35548 RNU2-68P-201ENST00000410878 191 ntBASIC3.47□□□□□ -1.85
MSX2P35548 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.47□□□□□ -1.85
MSX2P35548 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.47□□□□□ -1.85
MSX2P35548 PIGPP3-201ENST00000425307 415 ntBASIC3.47□□□□□ -1.85
MSX2P35548 AC006989.1-201ENST00000427212 131 ntBASIC3.47□□□□□ -1.85
MSX2P35548 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.47□□□□□ -1.85
MSX2P35548 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.47□□□□□ -1.85
MSX2P35548 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.47□□□□□ -1.85
MSX2P35548 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
MSX2P35548 U3.44-201ENST00000458938 192 ntBASIC3.47□□□□□ -1.85
MSX2P35548 RNA5SP310-201ENST00000459084 116 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms