Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
COL8A1P27658 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL8A1P27658 AC073073.2-201ENST00000609827 2578 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL8A1P27658 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.14□□□□□ -1.75
COL8A1P27658 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.14□□□□□ -1.75
COL8A1P27658 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
COL8A1P27658 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
COL8A1P27658 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.14□□□□□ -1.75
COL8A1P27658 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.13□□□□□ -1.75
COL8A1P27658 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
COL8A1P27658 RNU1-62P-201ENST00000362599 164 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 SNORD115-30-201ENST00000364117 82 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 RNU6-1141P-201ENST00000364520 107 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 RNU6-1152P-201ENST00000384576 107 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 PTMAP2-201ENST00000397627 327 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 RNU6-592P-201ENST00000411333 103 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 AL356387.2-201ENST00000422272 243 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 AC000111.2-201ENST00000448200 210 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 RN7SL814P-201ENST00000487715 300 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 AC006445.2-201ENST00000510061 472 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 AC093331.1-201ENST00000521474 169 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.13□□□□□ -1.75
COL8A1P27658 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC4.13□□□□□ -1.75
COL8A1P27658 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC4.13□□□□□ -1.75
COL8A1P27658 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.13□□□□□ -1.75
COL8A1P27658 AL356575.1-201ENST00000603008 283 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.13□□□□□ -1.75
COL8A1P27658 AL442128.1-201ENST00000615151 90 ntBASIC4.13□□□□□ -1.75
COL8A1P27658 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.13□□□□□ -1.75
COL8A1P27658 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.13□□□□□ -1.75
COL8A1P27658 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.13□□□□□ -1.75
COL8A1P27658 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
COL8A1P27658 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL8A1P27658 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.13□□□□□ -1.75
COL8A1P27658 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.13□□□□□ -1.75
COL8A1P27658 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.13□□□□□ -1.75
COL8A1P27658 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL8A1P27658 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.12□□□□□ -1.75
COL8A1P27658 MTND5P18-201ENST00000445624 1801 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL8A1P27658 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
COL8A1P27658 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL8A1P27658 Y_RNA.163-201ENST00000363702 113 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 SNORD45.3-201ENST00000363836 72 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 RNU1-140P-201ENST00000365040 165 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 Y_RNA.341-201ENST00000365341 102 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 SNORA51.5-201ENST00000384126 131 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 RNU6-136P-201ENST00000384663 107 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 CYCSP19-201ENST00000411715 316 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 CRYBB2P1-203ENST00000415709 538 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC4.12□□□□□ -1.75
COL8A1P27658 snoU13.24-201ENST00000458998 104 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.12□□□□□ -1.75
COL8A1P27658 AC040958.1-201ENST00000561102 201 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.12□□□□□ -1.75
COL8A1P27658 MIR3944-201ENST00000581277 108 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 SNORD84-203ENST00000584275 78 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 RPL30P11-203ENST00000598995 310 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.12□□□□□ -1.75
COL8A1P27658 U6.99-201ENST00000637524 83 ntBASIC4.12□□□□□ -1.75
COL8A1P27658 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
COL8A1P27658 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.12□□□□□ -1.75
COL8A1P27658 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL8A1P27658 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.12□□□□□ -1.75
COL8A1P27658 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL8A1P27658 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL8A1P27658 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.11□□□□□ -1.75
COL8A1P27658 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL8A1P27658 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL8A1P27658 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL8A1P27658 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL8A1P27658 AC092268.1-201ENST00000342691 405 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 DEFB108F-201ENST00000344638 222 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 Y_RNA.310-201ENST00000365063 113 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 SNORD18B-201ENST00000365659 72 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 RNU6-1336P-201ENST00000383886 109 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 RNU6-1074P-201ENST00000383995 104 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 MIR450A2-201ENST00000385022 100 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 MIR29B2-201ENST00000385055 81 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
COL8A1P27658 MIR1302-5-201ENST00000408164 150 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 RNU6-855P-201ENST00000410395 104 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC4.11□□□□□ -1.75
COL8A1P27658 AC078809.1-201ENST00000427601 140 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 GOT2P5-201ENST00000433995 546 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 AC007969.2-201ENST00000441891 191 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 AL590399.6-201ENST00000446396 307 ntBASIC4.11□□□□□ -1.75
COL8A1P27658 SNRPGP7-201ENST00000469016 106 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms