Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNA5SP49-201ENST00000516450 115 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 IGLV3-26-201ENST00000520756 302 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 AP003730.1-201ENST00000524605 285 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 AC084757.4-201ENST00000616350 526 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 AC091953.5-201ENST00000622919 233 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 ADAM3A-203ENST00000461344 2157 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 RNU1-14P-201ENST00000362759 152 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 RNU6-1280P-201ENST00000365211 107 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 SNORA22C-201ENST00000384614 134 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 MIR487A-201ENST00000385009 80 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 MIR493-201ENST00000385254 89 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 SNORD66.1-201ENST00000391230 76 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 RNU2-54P-201ENST00000410299 190 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 BTF3P11-201ENST00000426582 477 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 AC091390.1-201ENST00000433904 331 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 RPL26P9-201ENST00000457466 433 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 UQCRHP4-201ENST00000471686 272 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 AC078918.1-201ENST00000498515 228 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 RNU6-155P-201ENST00000516347 100 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 CYCSP29-201ENST00000533731 318 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 TGIF1P1-201ENST00000558095 802 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 MIR3939-201ENST00000582614 106 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 AL008718.3-201ENST00000610217 321 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 AL138721.1-201ENST00000616756 179 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC4.51□□□□□ -1.69
USP3Q9Y6I4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP3Q9Y6I4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 RNU1-62P-201ENST00000362599 164 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 Y_RNA.412-201ENST00000384001 104 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 ABCF2P2-201ENST00000450549 296 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 AC105137.1-201ENST00000484355 562 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 AC006064.5-201ENST00000541782 248 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 HSPE1P5-201ENST00000561489 272 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 AC023043.4-201ENST00000612081 449 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 AC004467.1-201ENST00000615678 330 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 Y_RNA.778-201ENST00000620203 90 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 MIR7154-201ENST00000620673 73 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 AL034408.1-202ENST00000636088 415 ntBASIC4.5□□□□□ -1.69
USP3Q9Y6I4 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.5□□□□□ -1.69
USP3Q9Y6I4 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 Y_RNA.101-201ENST00000363154 102 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 RNU6-1285P-201ENST00000363480 105 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 SNORA36A-201ENST00000384221 132 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 MIR607-201ENST00000385241 96 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 AL512633.1-201ENST00000399931 655 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 RNA5SP146-201ENST00000410743 123 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 snoU13.6-201ENST00000458785 104 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 RPL30P12-201ENST00000474666 353 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 PARP4P3-201ENST00000510265 317 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 RNU5F-8P-201ENST00000515941 111 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 RNA5SP519-201ENST00000516480 119 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.49□□□□□ -1.69
USP3Q9Y6I4 MIR4697-201ENST00000582977 78 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 IPO5P1-202ENST00000600039 287 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 AC006380.1-201ENST00000603598 186 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 AL078604.3-201ENST00000615580 211 ntBASIC4.49□□□□□ -1.69
USP3Q9Y6I4 AC092628.2-201ENST00000622492 339 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms