Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNA5SP497-201ENST00000516081 97 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 RNU2-58P-201ENST00000516403 183 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-919P-201ENST00000516731 104 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 DEFB131C-201ENST00000528817 165 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AC136624.4-201ENST00000573044 370 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 MIR548X2-201ENST00000579776 100 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 MIR4436B2-201ENST00000581415 91 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 MIR4436B1-201ENST00000583272 91 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AC019159.1-201ENST00000605094 187 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AL138963.2-201ENST00000605137 226 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AC100827.5-201ENST00000615883 426 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 Y_RNA.75-201ENST00000362927 97 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 RNU1-100P-201ENST00000365255 165 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 RNA5SP22-201ENST00000365393 109 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 RNA5SP87-201ENST00000384155 118 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 SNORA40-201ENST00000388090 126 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 MIR888-201ENST00000401186 77 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 RN7SKP167-201ENST00000411047 285 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 RPS20P14-201ENST00000412545 360 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 AC006466.1-201ENST00000438721 289 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 AC125238.1-201ENST00000448842 249 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 HMGB3P8-201ENST00000449709 577 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 IGLV2-34-201ENST00000490007 283 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-155P-201ENST00000516347 100 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-1234P-201ENST00000516877 103 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-1198P-201ENST00000516904 67 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 AC100770.1-201ENST00000532310 322 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 HSPE1P4-201ENST00000550617 308 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 MIR5571-201ENST00000577998 113 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 MIR3934-201ENST00000579806 107 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 RN7SL52P-201ENST00000584271 284 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 AC010999.1-201ENST00000611856 324 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.07□□□□□ -1.76
HIF3AQ9Y2N7 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 AC110491.1-201ENST00000562191 2010 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-50P-201ENST00000362356 103 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 RNA5SP307-201ENST00000362863 116 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 Y_RNA.127-201ENST00000363386 109 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 SNORA40.19-201ENST00000390846 128 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 RNA5SP146-201ENST00000410743 123 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 SNORA74C-2-201ENST00000411179 201 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 CR769767.1-201ENST00000436337 346 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 AC090616.3-201ENST00000582184 217 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 AC004825.2-201ENST00000616634 455 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 AC091932.3-201ENST00000624223 323 ntBASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
HIF3AQ9Y2N7 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 Y_RNA.71-201ENST00000362892 104 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-1325P-201ENST00000364905 105 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 RNU4-11P-201ENST00000365287 132 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 MIR549A-201ENST00000385268 96 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 RNA5SP397-201ENST00000391323 118 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 Y_RNA.625-201ENST00000411256 107 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 FAR2P2-201ENST00000413041 594 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 MTND4LP9-201ENST00000427694 174 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 AL137159.1-201ENST00000452808 512 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.05□□□□□ -1.76
HIF3AQ9Y2N7 SNRPGP5-201ENST00000456003 220 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms