Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RN7SL591P-201ENST00000496150 292 ntBASIC8.34□□□□□ -1.07
SENP3Q9H4L4 SNORD116-26-201ENST00000516006 96 ntBASIC8.34□□□□□ -1.07
SENP3Q9H4L4 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC8.34□□□□□ -1.08
SENP3Q9H4L4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
SENP3Q9H4L4 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 Y_RNA.332-201ENST00000365271 113 ntBASIC8.33□□□□□ -1.08
SENP3Q9H4L4 Y_RNA.508-201ENST00000384502 114 ntBASIC8.33□□□□□ -1.08
SENP3Q9H4L4 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 AC083982.1-201ENST00000485679 344 ntBASIC8.33□□□□□ -1.08
SENP3Q9H4L4 RNU6-928P-201ENST00000516876 104 ntBASIC8.33□□□□□ -1.08
SENP3Q9H4L4 OR9K1P-202ENST00000641111 3217 ntBASIC8.33□□□□□ -1.08
SENP3Q9H4L4 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 AC096644.4-201ENST00000563417 2912 ntBASIC8.33□□□□□ -1.08
SENP3Q9H4L4 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC8.33□□□□□ -1.08
SENP3Q9H4L4 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
SENP3Q9H4L4 AL731532.1-201ENST00000623972 4236 ntBASIC8.32□□□□□ -1.08
SENP3Q9H4L4 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
SENP3Q9H4L4 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
SENP3Q9H4L4 RN7SKP167-201ENST00000411047 285 ntBASIC8.32□□□□□ -1.08
SENP3Q9H4L4 AC023141.8-201ENST00000442554 208 ntBASIC8.32□□□□□ -1.08
SENP3Q9H4L4 PHBP16-201ENST00000446318 950 ntBASIC8.32□□□□□ -1.08
SENP3Q9H4L4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC8.32□□□□□ -1.08
SENP3Q9H4L4 AC078918.1-201ENST00000498515 228 ntBASIC8.32□□□□□ -1.08
SENP3Q9H4L4 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC8.32□□□□□ -1.08
SENP3Q9H4L4 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
SENP3Q9H4L4 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 RNU6-1084P-201ENST00000362498 107 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 SNORA25.4-201ENST00000363666 124 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 RNU6-234P-201ENST00000365229 104 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 MIR1294-201ENST00000408503 142 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 RNU6-1186P-201ENST00000410429 97 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 MRPS21P7-201ENST00000566937 238 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 RN7SL52P-201ENST00000584271 284 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 FAM27D1-201ENST00000612308 341 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 RN7SL722P-201ENST00000617780 284 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 RN7SL565P-201ENST00000618246 284 ntBASIC8.31□□□□□ -1.08
SENP3Q9H4L4 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC8.31□□□□□ -1.08
SENP3Q9H4L4 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 SNORA1B-201ENST00000362535 133 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 SNORA22.1-201ENST00000362701 134 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 RNA5SP350-201ENST00000363298 111 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 Y_RNA.173-201ENST00000363776 113 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 MIR147B-201ENST00000390185 80 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 RPL23AP48-201ENST00000406913 488 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 RPS15AP28-201ENST00000435088 386 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 NIP7P2-201ENST00000485801 544 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 RN7SL346P-201ENST00000491561 294 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 AC021678.3-201ENST00000517893 476 ntBASIC8.3□□□□□ -1.08
SENP3Q9H4L4 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC8.3□□□□□ -1.08
SENP3Q9H4L4 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
SENP3Q9H4L4 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
SENP3Q9H4L4 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
SENP3Q9H4L4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
SENP3Q9H4L4 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
SENP3Q9H4L4 U3.2-201ENST00000362981 210 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 Y_RNA.241-201ENST00000364470 117 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 RNU11-5P-201ENST00000391216 129 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 MIR1253-201ENST00000408273 105 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 RPL23AP93-201ENST00000440847 484 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 RNU7-34P-201ENST00000459394 64 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 RN7SL558P-201ENST00000497468 299 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 AC007536.1-201ENST00000533382 349 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 FAM25E-202ENST00000608562 189 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 AL139099.4-201ENST00000614802 114 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
SENP3Q9H4L4 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC8.29□□□□□ -1.08
SENP3Q9H4L4 AL034549.2-201ENST00000618285 3373 ntBASIC8.29□□□□□ -1.08
SENP3Q9H4L4 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC8.29□□□□□ -1.08
SENP3Q9H4L4 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 148.4 ms