Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 EDDM3CP-201ENST00000415977 425 ntBASIC2.05□□□□□ -2.08
VPS35Q96QK1 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.05□□□□□ -2.08
VPS35Q96QK1 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS35Q96QK1 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS35Q96QK1 MTND3P25-201ENST00000509243 135 ntBASIC2.05□□□□□ -2.08
VPS35Q96QK1 SNORA4.4-201ENST00000515921 135 ntBASIC2.05□□□□□ -2.08
VPS35Q96QK1 RNA5SP364-201ENST00000516938 78 ntBASIC2.05□□□□□ -2.08
VPS35Q96QK1 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS35Q96QK1 DUXAP5-201ENST00000529668 529 ntBASIC2.05□□□□□ -2.08
VPS35Q96QK1 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS35Q96QK1 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS35Q96QK1 AC090897.2-201ENST00000581715 130 ntBASIC2.05□□□□□ -2.08
VPS35Q96QK1 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS35Q96QK1 CLIC4P2-201ENST00000601934 717 ntBASIC2.05□□□□□ -2.08
VPS35Q96QK1 Z94722.1-201ENST00000604328 474 ntBASIC2.05□□□□□ -2.08
VPS35Q96QK1 AC026585.1-201ENST00000619582 524 ntBASIC2.05□□□□□ -2.08
VPS35Q96QK1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
VPS35Q96QK1 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS35Q96QK1 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
VPS35Q96QK1 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
VPS35Q96QK1 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
VPS35Q96QK1 SNORA16B-201ENST00000364674 135 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 SNORA25B-201ENST00000365507 128 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 RNU6-74P-201ENST00000384235 107 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 MIR561-201ENST00000385216 97 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 RNU6-550P-201ENST00000391057 101 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 AL049545.1-201ENST00000401856 572 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 RNU6-248P-201ENST00000410720 107 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 AL445646.1-201ENST00000431784 216 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.04□□□□□ -2.08
VPS35Q96QK1 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS35Q96QK1 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.04□□□□□ -2.08
VPS35Q96QK1 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS35Q96QK1 SNORD27.1-201ENST00000516319 72 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 SNORA31.25-201ENST00000517242 134 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 RNU6-586P-201ENST00000517265 104 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 IGKV3-31-201ENST00000523109 329 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 BNIP3P6-201ENST00000549284 499 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 IMMP1LP2-201ENST00000552954 492 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS35Q96QK1 AC245014.2-201ENST00000603689 287 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 AC246785.4-201ENST00000605374 287 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 AP001486.3-201ENST00000615334 372 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 AC011155.2-201ENST00000623202 216 ntBASIC2.04□□□□□ -2.08
VPS35Q96QK1 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
VPS35Q96QK1 RNU6-1287P-201ENST00000362914 107 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 U3.4-201ENST00000363352 213 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 RNU6-1097P-201ENST00000363586 107 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 SNORA67.3-201ENST00000384366 140 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 RNU6-1060P-201ENST00000384664 107 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 MIR454-201ENST00000390180 115 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 SNORA46.1-201ENST00000391069 153 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.03□□□□□ -2.08
VPS35Q96QK1 AL079342.1-201ENST00000401460 267 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 SNORA11.2-201ENST00000408318 127 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 RNU2-23P-201ENST00000410545 195 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 AL030996.1-201ENST00000411430 235 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 AL139156.1-201ENST00000412785 841 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC074117.2-201ENST00000417130 397 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.03□□□□□ -2.08
VPS35Q96QK1 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.03□□□□□ -2.08
VPS35Q96QK1 AL162395.1-201ENST00000457882 422 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 AL121594.1-201ENST00000475906 575 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC018868.1-201ENST00000491307 315 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 MTCO3P9-201ENST00000506989 781 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC027807.1-201ENST00000559921 996 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC022202.1-201ENST00000613515 211 ntBASIC2.03□□□□□ -2.08
VPS35Q96QK1 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.03□□□□□ -2.08
VPS35Q96QK1 AC009487.4-201ENST00000624969 3585 ntBASIC2.03□□□□□ -2.09
VPS35Q96QK1 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
VPS35Q96QK1 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
VPS35Q96QK1 RNU6-212P-201ENST00000362642 104 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 Y_RNA.40-201ENST00000362645 93 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 RNU6-655P-201ENST00000362858 107 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 RNU6-78P-201ENST00000362897 107 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 Y_RNA.201-201ENST00000364052 96 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 MIR1-2-201ENST00000384961 85 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 RNU6-607P-201ENST00000411283 108 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 OR9R1P-201ENST00000412200 877 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 PSPHP1-201ENST00000450062 261 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 RNA5SP233-201ENST00000459153 113 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.02□□□□□ -2.09
VPS35Q96QK1 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS35Q96QK1 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.02□□□□□ -2.09
VPS35Q96QK1 MTCO3P28-201ENST00000513351 515 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.02□□□□□ -2.09
VPS35Q96QK1 AC034114.1-201ENST00000520293 285 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.02□□□□□ -2.09
VPS35Q96QK1 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS35Q96QK1 ANP32BP3-201ENST00000559213 706 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 AC233702.2-202ENST00000562547 291 ntBASIC2.02□□□□□ -2.09
VPS35Q96QK1 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS35Q96QK1 AC006566.1-201ENST00000608943 513 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms