Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC007792.1-201ENST00000623023 402 ntBASIC2.16□□□□□ -2.06
HDDC3Q8N4P3 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.16□□□□□ -2.06
HDDC3Q8N4P3 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.15□□□□□ -2.06
HDDC3Q8N4P3 SNORD56.1-201ENST00000362913 68 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 RNU6-529P-201ENST00000363383 104 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 RNU6-1210P-201ENST00000363775 107 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AC019129.1-201ENST00000403786 261 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 RNA5SP390-201ENST00000410191 113 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 RNU2-23P-201ENST00000410545 195 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 RPS3AP3-201ENST00000411933 242 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AC074117.2-201ENST00000417130 397 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 MTCO3P5-201ENST00000433620 714 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AL121594.1-201ENST00000475906 575 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AP001025.1-201ENST00000486139 332 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AC109486.1-201ENST00000486833 374 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 NDUFA5P6-201ENST00000542110 379 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AC087883.1-201ENST00000551882 391 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AC078814.3-201ENST00000553036 491 ntBASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.15□□□□□ -2.07
HDDC3Q8N4P3 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 ZNF702P-202ENST00000434269 1966 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNA5SP276-201ENST00000362580 94 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 U8.3-201ENST00000363321 132 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNU6-169P-201ENST00000365336 107 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNU6-116P-201ENST00000384042 109 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNU6-1274P-201ENST00000384557 107 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 Y_RNA.576-201ENST00000384781 102 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 MIR583-201ENST00000384846 75 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 AL512604.1-201ENST00000404812 257 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNU2-32P-201ENST00000411193 191 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 AL356379.1-201ENST00000414105 126 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 AC007677.1-201ENST00000445757 515 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 AC004263.1-201ENST00000479327 332 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 AC104806.1-201ENST00000508720 308 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNU1-86P-201ENST00000516108 154 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNU1-107P-201ENST00000516617 154 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 MIR514B-201ENST00000516774 80 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNU6-410P-201ENST00000517006 107 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RNU6-685P-201ENST00000517088 95 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 BNIP3P6-201ENST00000549284 499 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 AL162373.1-201ENST00000620433 407 ntBASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.14□□□□□ -2.07
HDDC3Q8N4P3 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 SNORD115-3-201ENST00000363100 82 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 RNU6-371P-201ENST00000364283 108 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 RNU6-546P-201ENST00000383991 107 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 RNU5A-2P-201ENST00000384337 116 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 MIR518A2-201ENST00000384966 87 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 U8.13-201ENST00000390842 128 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 SNORA46.1-201ENST00000391069 153 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 SNORA48.3-201ENST00000391081 134 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 Y_RNA.595-201ENST00000410403 105 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 OR9R1P-201ENST00000412200 877 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 MTND2P9-201ENST00000422293 931 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 MTCYBP5-201ENST00000423752 1135 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 snoU109.1-201ENST00000459339 135 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AC006512.1-201ENST00000468816 291 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 RNU6-1053P-201ENST00000515930 101 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AP003392.2-201ENST00000527269 208 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 OR5AL2P-201ENST00000532185 920 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AC098848.2-201ENST00000588023 330 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AC090578.1-201ENST00000604955 591 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 AL359851.1-201ENST00000569460 4997 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
HDDC3Q8N4P3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 RNU5E-7P-201ENST00000365290 117 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 CBX3P9-201ENST00000402326 552 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 USP9YP27-201ENST00000418455 438 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 146.4 ms