Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC069200.1-201ENST00000609511 323 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 MTND5P9-201ENST00000503854 1755 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC068647.1-201ENST00000489539 2265 ntBASIC2.96□□□□□ -1.93
CCDC28AQ8IWP9 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 RNA5SP443-201ENST00000363083 132 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 RNA5SP42-201ENST00000364278 115 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 RN7SKP61-201ENST00000410642 295 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 CYCSP48-201ENST00000417124 323 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 NUP35P1-201ENST00000422734 947 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 RPL18P10-201ENST00000425606 538 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 Z98742.2-201ENST00000431564 187 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 RPL39P40-201ENST00000445481 146 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 MTCO3P10-201ENST00000455912 772 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 RN7SL601P-201ENST00000471221 293 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AC103987.1-201ENST00000473394 348 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 RN7SL860P-201ENST00000473738 223 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AC091167.1-201ENST00000492017 396 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 RNA5SP112-201ENST00000515937 99 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AP006245.1-201ENST00000522549 120 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AC115990.1-201ENST00000526957 301 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 HSPE1P4-201ENST00000550617 308 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AC009318.2-201ENST00000610917 651 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AC022140.2-201ENST00000623500 188 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AC073476.4-201ENST00000628409 72 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 AL732372.2-225ENST00000642124 456 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 MTND5P10-201ENST00000603719 1809 ntBASIC2.96□□□□□ -1.94
CCDC28AQ8IWP9 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AP000560.1-201ENST00000624150 1937 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 SNORD50.1-201ENST00000362987 71 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 Y_RNA.146-201ENST00000363549 102 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 Y_RNA.187-201ENST00000363918 113 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 RNU4-76P-201ENST00000364509 141 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 Y_RNA.813-201ENST00000364639 102 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 SNORD21-201ENST00000383953 95 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 Y_RNA.419-201ENST00000384041 102 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 MIR199A2-201ENST00000385289 110 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 SNORA75.6-201ENST00000391318 127 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 BX276092.3-201ENST00000424182 230 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AC009296.1-201ENST00000443146 155 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 CENPBD1P1-201ENST00000464061 469 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 FO393415.2-201ENST00000480085 343 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AC016632.1-201ENST00000503994 196 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-1170P-201ENST00000515974 106 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 RNA5SP384-201ENST00000516615 116 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AC010620.2-201ENST00000600135 313 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AC073410.2-201ENST00000603240 332 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AL359198.2-201ENST00000611836 194 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 AC108206.1-201ENST00000570186 4159 ntBASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC28AQ8IWP9 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC092268.1-201ENST00000342691 405 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-212P-201ENST00000362642 104 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-694P-201ENST00000364071 147 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 SNORA68.1-201ENST00000364537 132 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 RNU6-142P-201ENST00000384019 107 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 Y_RNA.579-201ENST00000390939 94 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC097463.2-201ENST00000421074 142 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC078809.1-201ENST00000427601 140 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 RPL23AP50-201ENST00000434149 455 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 NDUFB1P1-201ENST00000435191 180 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 RPL23AP58-201ENST00000440453 469 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC079354.2-201ENST00000453523 154 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 snoU13.14-201ENST00000459372 104 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC104564.1-201ENST00000493028 407 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC005741.1-201ENST00000511094 432 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 AC091874.1-201ENST00000511402 339 ntBASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC28AQ8IWP9 SCARNA16.2-201ENST00000516520 172 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms