Protein–RNA interactions for Protein: Q15651

HMGN3, High mobility group nucleosome-binding domain-containing protein 3, humanhuman

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3Q15651 TRAV32-201ENST00000553993 340 ntBASIC0.05□□□□□ -2.4
HMGN3Q15651 AL020997.3-201ENST00000602843 359 ntBASIC0.05□□□□□ -2.4
HMGN3Q15651 AC022387.2-201ENST00000604050 448 ntBASIC0.05□□□□□ -2.4
HMGN3Q15651 AL355598.1-201ENST00000604169 202 ntBASIC0.05□□□□□ -2.4
HMGN3Q15651 AC034229.4-201ENST00000607861 441 ntBASIC0.05□□□□□ -2.4
HMGN3Q15651 AC009237.15-201ENST00000610252 501 ntBASIC0.05□□□□□ -2.4
HMGN3Q15651 RMST_2.1-201ENST00000617263 136 ntBASIC0.05□□□□□ -2.4
HMGN3Q15651 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC0.05□□□□□ -2.4
HMGN3Q15651 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC0.05□□□□□ -2.4
HMGN3Q15651 MIR924-201ENST00000638017 53 ntBASIC0.05□□□□□ -2.4
HMGN3Q15651 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.04□□□□□ -2.4
HMGN3Q15651 RNU4-79P-201ENST00000362764 141 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 RNY1P14-201ENST00000384426 108 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 MIR1295A-201ENST00000408463 79 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 RNU2-70P-201ENST00000410718 179 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 BTF3L4P3-201ENST00000418879 476 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 NEFMP1-201ENST00000443423 1006 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.04□□□□□ -2.4
HMGN3Q15651 AC105313.1-201ENST00000509121 353 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.04□□□□□ -2.4
HMGN3Q15651 SNORA31.2-201ENST00000516019 134 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 RNA5SP437-201ENST00000517249 129 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 AC107304.1-201ENST00000604229 296 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 AL138726.1-201ENST00000614873 333 ntBASIC0.04□□□□□ -2.4
HMGN3Q15651 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
HMGN3Q15651 EBAG9P1-201ENST00000418955 543 ntBASIC0.03□□□□□ -2.4
HMGN3Q15651 AL445305.1-201ENST00000432577 575 ntBASIC0.03□□□□□ -2.4
HMGN3Q15651 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.03□□□□□ -2.4
HMGN3Q15651 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGN3Q15651 AL596276.1-201ENST00000434465 418 ntBASIC0.03□□□□□ -2.4
HMGN3Q15651 RNU5A-4P-201ENST00000516588 111 ntBASIC0.03□□□□□ -2.4
HMGN3Q15651 AL356057.1-201ENST00000533798 831 ntBASIC0.03□□□□□ -2.4
HMGN3Q15651 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC0.03□□□□□ -2.4
HMGN3Q15651 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC0.03□□□□□ -2.4
HMGN3Q15651 AL590229.1-201ENST00000603497 542 ntBASIC0.03□□□□□ -2.4
HMGN3Q15651 AC107952.2-201ENST00000606048 486 ntBASIC0.03□□□□□ -2.4
HMGN3Q15651 RNU6-944P-201ENST00000364023 107 ntBASIC0.02□□□□□ -2.41
HMGN3Q15651 AL590556.1-201ENST00000423231 483 ntBASIC0.02□□□□□ -2.41
HMGN3Q15651 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC0.02□□□□□ -2.41
HMGN3Q15651 MTCYBP40-201ENST00000509390 1135 ntBASIC0.02□□□□□ -2.41
HMGN3Q15651 SNORA3.4-201ENST00000515969 96 ntBASIC0.02□□□□□ -2.41
HMGN3Q15651 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.02□□□□□ -2.41
HMGN3Q15651 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.02□□□□□ -2.41
HMGN3Q15651 AC092451.2-201ENST00000538746 658 ntBASIC0.02□□□□□ -2.41
HMGN3Q15651 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
HMGN3Q15651 LARP7P2-201ENST00000575306 125 ntBASIC0.02□□□□□ -2.41
HMGN3Q15651 KC877982.1-201ENST00000602313 470 ntBASIC0.02□□□□□ -2.41
HMGN3Q15651 MIR6734-201ENST00000621166 68 ntBASIC0.02□□□□□ -2.41
HMGN3Q15651 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.01□□□□□ -2.41
HMGN3Q15651 SEC63P2-201ENST00000503863 1939 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 SNORD114-6-201ENST00000364393 72 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 MIR520A-201ENST00000384862 85 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 DHFRP6-201ENST00000401776 268 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 DNAJA1P2-201ENST00000421360 1197 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 AC019178.2-201ENST00000423595 505 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
HMGN3Q15651 AL035398.1-201ENST00000430869 322 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 AC005345.1-201ENST00000431868 217 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 ZNF965P-201ENST00000432501 817 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 GAPDHP17-201ENST00000449858 1001 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 OR6C5P-201ENST00000452388 923 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 SNORA31.4-201ENST00000516049 129 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 RNU2-53P-201ENST00000516257 147 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC0.01□□□□□ -2.41
HMGN3Q15651 AC087854.1-201ENST00000519706 414 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.01□□□□□ -2.41
HMGN3Q15651 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC0.01□□□□□ -2.41
HMGN3Q15651 SNORA4-201ENST00000584302 138 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 VN1R88P-201ENST00000596787 292 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 AC073410.2-201ENST00000603240 332 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 AP000654.2-201ENST00000605633 586 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 RMST_4.1-201ENST00000616886 107 ntBASIC0.01□□□□□ -2.41
HMGN3Q15651 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC0.01□□□□□ -2.41
HMGN3Q15651 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.01□□□□□ -2.41
HMGN3Q15651 SNORD114-23-201ENST00000363536 72 ntBASIC0□□□□□ -2.41
HMGN3Q15651 Y_RNA.226-201ENST00000364337 114 ntBASIC0□□□□□ -2.41
HMGN3Q15651 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC0□□□□□ -2.41
HMGN3Q15651 AC099677.2-201ENST00000436385 175 ntBASIC0□□□□□ -2.41
HMGN3Q15651 RPEP5-201ENST00000441137 268 ntBASIC0□□□□□ -2.41
HMGN3Q15651 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC0□□□□□ -2.41
HMGN3Q15651 AC022493.2-201ENST00000506122 481 ntBASIC0□□□□□ -2.41
HMGN3Q15651 AC116655.1-201ENST00000508324 901 ntBASIC0□□□□□ -2.41
HMGN3Q15651 Y_RNA.676-201ENST00000516393 96 ntBASIC0□□□□□ -2.41
HMGN3Q15651 AC004853.1-201ENST00000604902 698 ntBASIC0□□□□□ -2.41
HMGN3Q15651 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
HMGN3Q15651 AC092106.3-201ENST00000611308 722 ntBASIC0□□□□□ -2.41
HMGN3Q15651 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0□□□□□ -2.41
HMGN3Q15651 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC-0.01□□□□□ -2.41
HMGN3Q15651 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC-0.01□□□□□ -2.41
HMGN3Q15651 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
HMGN3Q15651 MIRLET7D-201ENST00000362263 87 ntBASIC-0.01□□□□□ -2.41
HMGN3Q15651 Y_RNA.116-201ENST00000363292 103 ntBASIC-0.01□□□□□ -2.41
HMGN3Q15651 RNU6-115P-201ENST00000364310 107 ntBASIC-0.01□□□□□ -2.41
HMGN3Q15651 RNU6-1280P-201ENST00000365211 107 ntBASIC-0.01□□□□□ -2.41
HMGN3Q15651 MIR194-1-201ENST00000384892 85 ntBASIC-0.01□□□□□ -2.41
HMGN3Q15651 SNORD12-201ENST00000391002 90 ntBASIC-0.01□□□□□ -2.41
HMGN3Q15651 MIR1287-201ENST00000408492 90 ntBASIC-0.01□□□□□ -2.41
HMGN3Q15651 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC-0.01□□□□□ -2.41
HMGN3Q15651 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms