Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL8A1P27658 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.17□□□□□ -1.74
COL8A1P27658 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
COL8A1P27658 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
COL8A1P27658 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.16□□□□□ -1.74
COL8A1P27658 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
COL8A1P27658 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 SPRR2C-201ENST00000290702 219 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
COL8A1P27658 SNORA71.3-201ENST00000362582 128 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 RNU6-1285P-201ENST00000363480 105 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 RNU6-1107P-201ENST00000364817 104 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 RNU6-144P-201ENST00000383951 107 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 RNU6-756P-201ENST00000383997 107 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 RNU1-82P-201ENST00000390851 165 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 SNORD78.1-201ENST00000390866 65 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 RNU6-837P-201ENST00000391056 108 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.16□□□□□ -1.74
COL8A1P27658 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.16□□□□□ -1.74
COL8A1P27658 UQCRHP4-201ENST00000471686 272 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.16□□□□□ -1.74
COL8A1P27658 RNU6-781P-201ENST00000516377 101 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 MIR378D2-201ENST00000580636 98 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 AL161756.2-201ENST00000604597 246 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 AC025166.1-201ENST00000612411 163 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.16□□□□□ -1.74
COL8A1P27658 AP005019.3-201ENST00000620418 560 ntBASIC4.16□□□□□ -1.74
COL8A1P27658 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL8A1P27658 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
COL8A1P27658 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
COL8A1P27658 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
COL8A1P27658 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.74
COL8A1P27658 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL8A1P27658 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
COL8A1P27658 LINC01355-201ENST00000566551 5444 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.15□□□□□ -1.75
COL8A1P27658 MIR372-201ENST00000362225 67 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 MIR367-201ENST00000362299 68 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 RNU6-942P-201ENST00000363002 107 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 Y_RNA.219-201ENST00000364232 113 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 RNA5SP283-201ENST00000365604 119 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 Y_RNA.456-201ENST00000384232 111 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 RN7SKP61-201ENST00000410642 295 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC4.15□□□□□ -1.75
COL8A1P27658 AP000705.1-201ENST00000454567 350 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 snoU13.6-201ENST00000458785 104 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 RNU7-141P-201ENST00000459304 62 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 AL591473.1-201ENST00000464297 313 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.15□□□□□ -1.75
COL8A1P27658 AC026726.1-201ENST00000512859 601 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 SCARNA15.2-201ENST00000516409 127 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 HSPE1P4-201ENST00000550617 308 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 AC021231.3-201ENST00000558497 370 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 MIR4472-2-201ENST00000582069 67 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL8A1P27658 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL8A1P27658 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.15□□□□□ -1.75
COL8A1P27658 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.15□□□□□ -1.75
COL8A1P27658 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.15□□□□□ -1.75
COL8A1P27658 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
COL8A1P27658 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL8A1P27658 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.75
COL8A1P27658 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL8A1P27658 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL8A1P27658 AC022336.2-201ENST00000568966 2538 ntBASIC4.15□□□□□ -1.75
COL8A1P27658 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL8A1P27658 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.14□□□□□ -1.75
COL8A1P27658 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
COL8A1P27658 RNU6-454P-201ENST00000364292 107 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL8A1P27658 RNU6-1264P-201ENST00000383891 107 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 SNORA36A-201ENST00000384221 132 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 AL590762.2-201ENST00000395798 571 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 AL603914.1-201ENST00000401964 204 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 AL031003.1-201ENST00000404229 172 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 SNORA79-201ENST00000408376 140 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 RNU2-68P-201ENST00000410878 191 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 RPS20P14-201ENST00000412545 360 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 COX5BP7-201ENST00000414780 274 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.14□□□□□ -1.75
COL8A1P27658 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.14□□□□□ -1.75
COL8A1P27658 AC007215.1-201ENST00000464893 276 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.14□□□□□ -1.75
COL8A1P27658 AC015795.1-201ENST00000513669 327 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 RNU6-970P-201ENST00000516312 107 ntBASIC4.14□□□□□ -1.75
COL8A1P27658 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.14□□□□□ -1.75
COL8A1P27658 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.14□□□□□ -1.75
COL8A1P27658 U73479.1-201ENST00000618062 168 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms