Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 MIR34A-201ENST00000385130 110 ntBASIC4.45□□□□□ -1.7
LIG1P18858 AL139156.1-201ENST00000412785 841 ntBASIC4.45□□□□□ -1.7
LIG1P18858 RPS29P7-201ENST00000439662 171 ntBASIC4.45□□□□□ -1.7
LIG1P18858 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.45□□□□□ -1.7
LIG1P18858 TRBV12-2-201ENST00000489763 344 ntBASIC4.45□□□□□ -1.7
LIG1P18858 RNU7-175P-201ENST00000515915 61 ntBASIC4.45□□□□□ -1.7
LIG1P18858 RNU1-61P-201ENST00000516107 151 ntBASIC4.45□□□□□ -1.7
LIG1P18858 AC022868.1-201ENST00000517767 391 ntBASIC4.45□□□□□ -1.7
LIG1P18858 YPEL5P3-201ENST00000547227 352 ntBASIC4.45□□□□□ -1.7
LIG1P18858 HMGB1P14-201ENST00000557424 591 ntBASIC4.45□□□□□ -1.7
LIG1P18858 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.45□□□□□ -1.7
LIG1P18858 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIG1P18858 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.45□□□□□ -1.7
LIG1P18858 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
LIG1P18858 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIG1P18858 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.44□□□□□ -1.7
LIG1P18858 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
LIG1P18858 Y_RNA.65-201ENST00000362846 100 ntBASIC4.44□□□□□ -1.7
LIG1P18858 RNU6-428P-201ENST00000362942 107 ntBASIC4.44□□□□□ -1.7
LIG1P18858 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.44□□□□□ -1.7
LIG1P18858 RNU6-886P-201ENST00000384319 105 ntBASIC4.44□□□□□ -1.7
LIG1P18858 RNU6-166P-201ENST00000384371 107 ntBASIC4.44□□□□□ -1.7
LIG1P18858 SNORA57.1-201ENST00000391227 145 ntBASIC4.44□□□□□ -1.7
LIG1P18858 TMEM167AP1-201ENST00000423409 219 ntBASIC4.44□□□□□ -1.7
LIG1P18858 AL356867.1-201ENST00000429623 299 ntBASIC4.44□□□□□ -1.7
LIG1P18858 HMGN2P20-201ENST00000437531 273 ntBASIC4.44□□□□□ -1.7
LIG1P18858 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LIG1P18858 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.44□□□□□ -1.7
LIG1P18858 AL359273.1-201ENST00000510918 627 ntBASIC4.44□□□□□ -1.7
LIG1P18858 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.44□□□□□ -1.7
LIG1P18858 RNU6-377P-201ENST00000515965 102 ntBASIC4.44□□□□□ -1.7
LIG1P18858 RNA5SP290-201ENST00000517133 127 ntBASIC4.44□□□□□ -1.7
LIG1P18858 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.44□□□□□ -1.7
LIG1P18858 RPL23AP78-201ENST00000599928 470 ntBASIC4.44□□□□□ -1.7
LIG1P18858 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
LIG1P18858 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.44□□□□□ -1.7
LIG1P18858 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LIG1P18858 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
LIG1P18858 AL136164.4-201ENST00000625013 2135 ntBASIC4.43□□□□□ -1.7
LIG1P18858 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.43□□□□□ -1.7
LIG1P18858 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LIG1P18858 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
LIG1P18858 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
LIG1P18858 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIG1P18858 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.43□□□□□ -1.7
LIG1P18858 Y_RNA.200-201ENST00000364018 102 ntBASIC4.43□□□□□ -1.7
LIG1P18858 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.43□□□□□ -1.7
LIG1P18858 RNU6-746P-201ENST00000384112 109 ntBASIC4.43□□□□□ -1.7
LIG1P18858 Y_RNA.581-201ENST00000391017 97 ntBASIC4.43□□□□□ -1.7
LIG1P18858 ANXA2P1-201ENST00000505539 926 ntBASIC4.43□□□□□ -1.7
LIG1P18858 RNU6-1256P-201ENST00000516539 103 ntBASIC4.43□□□□□ -1.7
LIG1P18858 Y_RNA.706-201ENST00000516933 99 ntBASIC4.43□□□□□ -1.7
LIG1P18858 AC004024.1-201ENST00000549244 247 ntBASIC4.43□□□□□ -1.7
LIG1P18858 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.43□□□□□ -1.7
LIG1P18858 Y_RNA.772-201ENST00000606692 102 ntBASIC4.43□□□□□ -1.7
LIG1P18858 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.43□□□□□ -1.7
LIG1P18858 U4.7-201ENST00000638126 106 ntBASIC4.43□□□□□ -1.7
LIG1P18858 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.43□□□□□ -1.7
LIG1P18858 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.43□□□□□ -1.7
LIG1P18858 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.43□□□□□ -1.7
LIG1P18858 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.42□□□□□ -1.7
LIG1P18858 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
LIG1P18858 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.42□□□□□ -1.7
LIG1P18858 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LIG1P18858 Y_RNA.54-201ENST00000362766 105 ntBASIC4.42□□□□□ -1.7
LIG1P18858 Y_RNA.269-201ENST00000364685 89 ntBASIC4.42□□□□□ -1.7
LIG1P18858 Y_RNA.277-201ENST00000364754 102 ntBASIC4.42□□□□□ -1.7
LIG1P18858 HLFP1-201ENST00000402375 499 ntBASIC4.42□□□□□ -1.7
LIG1P18858 PPIAP31-201ENST00000405422 495 ntBASIC4.42□□□□□ -1.7
LIG1P18858 MIR1290-201ENST00000408735 78 ntBASIC4.42□□□□□ -1.7
LIG1P18858 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.42□□□□□ -1.7
LIG1P18858 AC034236.1-201ENST00000469891 373 ntBASIC4.42□□□□□ -1.7
LIG1P18858 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC4.42□□□□□ -1.7
LIG1P18858 RNA5SP208-201ENST00000516156 78 ntBASIC4.42□□□□□ -1.7
LIG1P18858 SNORA31.19-201ENST00000517079 126 ntBASIC4.42□□□□□ -1.7
LIG1P18858 AC010186.2-204ENST00000537668 439 ntBASIC4.42□□□□□ -1.7
LIG1P18858 MED28P6-201ENST00000558776 231 ntBASIC4.42□□□□□ -1.7
LIG1P18858 AC106785.1-201ENST00000565935 262 ntBASIC4.42□□□□□ -1.7
LIG1P18858 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.42□□□□□ -1.7
LIG1P18858 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.42□□□□□ -1.7
LIG1P18858 AC091167.4-201ENST00000605079 184 ntBASIC4.42□□□□□ -1.7
LIG1P18858 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.42□□□□□ -1.7
LIG1P18858 AC090617.7-201ENST00000623952 126 ntBASIC4.42□□□□□ -1.7
LIG1P18858 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.42□□□□□ -1.7
LIG1P18858 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.42□□□□□ -1.7
LIG1P18858 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LIG1P18858 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIG1P18858 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIG1P18858 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIG1P18858 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIG1P18858 AL359693.1-201ENST00000614959 2407 ntBASIC4.42□□□□□ -1.7
LIG1P18858 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.42□□□□□ -1.7
LIG1P18858 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.42□□□□□ -1.7
LIG1P18858 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIG1P18858 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIG1P18858 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.41□□□□□ -1.7
LIG1P18858 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIG1P18858 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIG1P18858 RNU6-1266P-201ENST00000362794 105 ntBASIC4.41□□□□□ -1.7
LIG1P18858 Y_RNA.143-201ENST00000363520 106 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms