Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC022022.2-201ENST00000602989 360 ntBASIC0.78□□□□□ -2.28
HMGB3O15347 AC112220.3-201ENST00000605502 502 ntBASIC0.78□□□□□ -2.28
HMGB3O15347 AL020996.3-201ENST00000606617 222 ntBASIC0.78□□□□□ -2.28
HMGB3O15347 AL159153.1-201ENST00000619688 317 ntBASIC0.78□□□□□ -2.28
HMGB3O15347 MTND5P35-201ENST00000557537 1720 ntBASIC0.78□□□□□ -2.29
HMGB3O15347 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
HMGB3O15347 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
HMGB3O15347 snoU2_19.1-201ENST00000362361 80 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 RNU6-777P-201ENST00000364265 104 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC0.77□□□□□ -2.29
HMGB3O15347 Y_RNA.500-201ENST00000384466 111 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 RPL23AP32-201ENST00000395315 459 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 MRPL35P1-201ENST00000404272 572 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 AL359704.1-201ENST00000411586 781 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC0.77□□□□□ -2.29
HMGB3O15347 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
HMGB3O15347 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGB3O15347 PRPS1P1-201ENST00000445305 876 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 AC009474.2-201ENST00000451383 136 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGB3O15347 AC119751.5-201ENST00000514077 770 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 AC027338.1-201ENST00000514840 825 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC0.77□□□□□ -2.29
HMGB3O15347 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.77□□□□□ -2.29
HMGB3O15347 MIR5094-201ENST00000578766 85 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.77□□□□□ -2.29
HMGB3O15347 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGB3O15347 AC013244.2-201ENST00000603396 103 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 MIR6078-201ENST00000611069 100 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC0.77□□□□□ -2.29
HMGB3O15347 uc_338.12-201ENST00000616344 181 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 MIR8065-201ENST00000620577 100 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 AC027335.2-201ENST00000624030 375 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 AC009033.1-201ENST00000624279 431 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 MTND5P42-201ENST00000637720 498 ntBASIC0.77□□□□□ -2.29
HMGB3O15347 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
HMGB3O15347 SNORA7.1-201ENST00000363750 139 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 Y_RNA.332-201ENST00000365271 113 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.76□□□□□ -2.29
HMGB3O15347 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.76□□□□□ -2.29
HMGB3O15347 RPL21P111-201ENST00000418453 477 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 SNRPEP10-201ENST00000420249 274 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 AC013410.2-201ENST00000422627 201 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 UBE2D3P3-201ENST00000426992 425 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC0.76□□□□□ -2.29
HMGB3O15347 PAXBP1P1-201ENST00000449315 447 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.76□□□□□ -2.29
HMGB3O15347 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.76□□□□□ -2.29
HMGB3O15347 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.76□□□□□ -2.29
HMGB3O15347 RNU6-914P-201ENST00000516749 109 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 RNU6-1092P-201ENST00000516955 87 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 RNU6-334P-201ENST00000517072 102 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.76□□□□□ -2.29
HMGB3O15347 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.76□□□□□ -2.29
HMGB3O15347 AC112220.2-201ENST00000605513 533 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 AC063943.3-201ENST00000615562 356 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 AL353770.2-201ENST00000620024 78 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 AC120349.3-201ENST00000624377 529 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 AP003485.1-201ENST00000625093 753 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 AC099654.5-201ENST00000636479 350 ntBASIC0.76□□□□□ -2.29
HMGB3O15347 Y_RNA.33-201ENST00000362591 102 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 RNU5B-4P-201ENST00000363508 111 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 SNORD114-2-201ENST00000363953 78 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 RNU4-38P-201ENST00000364472 129 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 SNORA75B-201ENST00000384053 137 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AL603865.2-201ENST00000401679 213 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 MTCO1P17-201ENST00000411522 491 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.75□□□□□ -2.29
HMGB3O15347 AC009518.2-201ENST00000418056 731 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AL365338.1-201ENST00000422282 858 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 MTCO2P1-201ENST00000424648 477 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.75□□□□□ -2.29
HMGB3O15347 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC0.75□□□□□ -2.29
HMGB3O15347 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.75□□□□□ -2.29
HMGB3O15347 AC026616.1-201ENST00000523157 525 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.75□□□□□ -2.29
HMGB3O15347 DEFB108A-201ENST00000530110 222 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AL512310.8-201ENST00000550183 120 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AL136520.1-202ENST00000555494 763 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC0.75□□□□□ -2.29
HMGB3O15347 AC027807.1-201ENST00000559921 996 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.75□□□□□ -2.29
HMGB3O15347 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC0.75□□□□□ -2.29
HMGB3O15347 AL157834.3-201ENST00000615543 103 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AL589994.2-201ENST00000621124 579 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AC104985.3-201ENST00000623479 597 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 MIR6866-201ENST00000638146 69 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 AC006927.2-201ENST00000639256 389 ntBASIC0.75□□□□□ -2.29
HMGB3O15347 RNU1-36P-201ENST00000365130 165 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 U8.10-201ENST00000384260 133 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 RNU6-72P-201ENST00000384285 79 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 RNU6-1065P-201ENST00000384513 106 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 RNU6-278P-201ENST00000390945 109 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 FCF1P10-201ENST00000407590 479 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 ZNF736P7Y-201ENST00000425158 820 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 RPL17P35-201ENST00000432217 549 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC0.74□□□□□ -2.29
HMGB3O15347 EEF1E1P1-201ENST00000446998 430 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 RPS27AP8-201ENST00000452665 445 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 MTND1P3-201ENST00000484956 952 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms