Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC091042.1-201ENST00000579213 173 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 MIR3684-201ENST00000579779 74 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AC010332.2-201ENST00000613083 1904 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 ANKRD30BP1-201ENST00000451052 2186 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AC010733.2-201ENST00000589496 5702 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 Y_RNA.23-201ENST00000362496 106 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-600P-201ENST00000362524 99 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 SNORD56.1-201ENST00000362913 68 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-137P-201ENST00000363680 108 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-873P-201ENST00000363833 107 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 Y_RNA.273-201ENST00000364703 102 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 RNU4-17P-201ENST00000365598 141 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 SNORA20-201ENST00000384662 132 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 HDGFP1-201ENST00000405943 252 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AL590762.4-201ENST00000425885 253 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 VDAC1P3-201ENST00000434069 851 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 GPM6BP3-201ENST00000442797 145 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AC011276.1-201ENST00000469688 323 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AC008897.1-201ENST00000494006 347 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 SNORA25.12-201ENST00000516202 82 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 IGKV1-32-201ENST00000519290 311 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 CR383656.8-201ENST00000549046 145 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 TGIF1P1-201ENST00000558095 802 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AC233702.2-202ENST00000562547 291 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 DEFB117-201ENST00000602356 141 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 AC012468.1-201ENST00000604888 430 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 MIR6748-201ENST00000610433 71 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 MIR6134-201ENST00000617606 109 ntBASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HIF3AQ9Y2N7 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.09□□□□□ -1.76
HIF3AQ9Y2N7 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
HIF3AQ9Y2N7 CUL1P1-201ENST00000509510 2425 ntBASIC4.09□□□□□ -1.76
HIF3AQ9Y2N7 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 CPHL1P-201ENST00000461341 3407 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AC021146.4-201ENST00000309229 279 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AL590240.1-201ENST00000334118 313 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 SNORA31-201ENST00000362607 130 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-1272P-201ENST00000362776 107 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 Y_RNA.101-201ENST00000363154 102 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 RNA5SP197-201ENST00000363357 119 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-153P-201ENST00000364422 104 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 RNU1-63P-201ENST00000383902 164 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 RNU1-44P-201ENST00000384453 163 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 U3.19-201ENST00000390893 196 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 Y_RNA.595-201ENST00000410403 105 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 RN7SKP216-201ENST00000411050 312 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AC074117.2-201ENST00000417130 397 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AC007969.2-201ENST00000441891 191 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 RNU6-625P-201ENST00000459412 107 ntBASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.08□□□□□ -1.76
HIF3AQ9Y2N7 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms