Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 TRIAP1P1-201ENST00000427062 225 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC005326.1-201ENST00000429197 123 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 Y_RNA.708-201ENST00000516950 96 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC104576.1-201ENST00000524225 88 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC124303.1-201ENST00000605703 360 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC019193.3-201ENST00000609144 554 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 PISRT1.1-201ENST00000616930 107 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 MIR6134-201ENST00000617606 109 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC007318.2-201ENST00000620999 243 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AC099654.10-201ENST00000640395 161 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 AL353743.1-202ENST00000431724 1695 ntBASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.58□□□□□ -1.84
LIMCH1Q9UPQ0 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 Z98749.2-208ENST00000381646 500 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 Y_RNA.419-201ENST00000384041 102 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 SNORD116-29-201ENST00000384516 83 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AC007256.1-201ENST00000392253 2765 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AL030996.1-201ENST00000411430 235 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AC093151.1-201ENST00000427711 313 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AC098831.1-201ENST00000440661 216 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AL031274.1-201ENST00000450334 232 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 PCMTD1P1-201ENST00000455560 355 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 RNU7-152P-201ENST00000458982 64 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 Y_RNA.653-201ENST00000459091 95 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 RPS27AP10-201ENST00000496103 208 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 Y_RNA.687-201ENST00000516558 91 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AP004607.1-201ENST00000524456 203 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AL391261.3-201ENST00000557194 520 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AC110491.1-201ENST00000562191 2010 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 MIR5680-201ENST00000577577 84 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 MIR4474-201ENST00000579189 78 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
LIMCH1Q9UPQ0 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AL035425.3-201ENST00000564206 4996 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 Y_RNA.187-201ENST00000363918 113 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 MIR518D-201ENST00000385014 87 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 RNA5SP38-201ENST00000410750 119 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AF228730.4-201ENST00000421457 183 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 BPY2DP-201ENST00000422208 265 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC005534.2-201ENST00000431047 433 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC244505.4-201ENST00000434905 287 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 SSXP5-201ENST00000443473 287 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC007677.1-201ENST00000445757 515 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC013470.1-201ENST00000453438 462 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 SNORD5.1-201ENST00000458800 75 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 snoU13.28-201ENST00000459235 104 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-377P-201ENST00000515965 102 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AL163153.1-201ENST00000554223 283 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC018462.2-201ENST00000605375 395 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 MIR7112-201ENST00000616126 65 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AC244517.12-201ENST00000623581 663 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 U4.7-201ENST00000638126 106 ntBASIC3.56□□□□□ -1.84
LIMCH1Q9UPQ0 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AC010680.1-201ENST00000590024 3590 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-1227P-201ENST00000383981 107 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-933P-201ENST00000384424 107 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 RNU6-1050P-201ENST00000410388 107 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AL117339.3-201ENST00000418733 162 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AC006028.1-201ENST00000438379 402 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 DAP3P1-201ENST00000441522 278 ntBASIC3.55□□□□□ -1.84
LIMCH1Q9UPQ0 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms