Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.73□□□□□ -1.81
TRIM39Q9HCM9 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.73□□□□□ -1.81
TRIM39Q9HCM9 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.73□□□□□ -1.81
TRIM39Q9HCM9 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
TRIM39Q9HCM9 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
TRIM39Q9HCM9 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
TRIM39Q9HCM9 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
TRIM39Q9HCM9 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 RNU6-487P-201ENST00000365430 104 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 RNU6-843P-201ENST00000384454 104 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 RNU6-19P-201ENST00000384718 107 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 RNA5SP252-201ENST00000391131 119 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AC096649.2-201ENST00000416186 393 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 MRPS18CP6-201ENST00000423587 223 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AC017083.1-201ENST00000428093 483 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AL445584.1-201ENST00000431451 330 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AL513124.1-201ENST00000450410 614 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AL136097.1-201ENST00000456945 913 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 RN7SL542P-201ENST00000467147 294 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 SNORA31.21-201ENST00000517180 77 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 RNU6-1231P-201ENST00000517185 103 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 RNU1-45P-201ENST00000517191 141 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AC091144.1-201ENST00000519573 138 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 MIR4680-201ENST00000580906 66 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AL078596.1-201ENST00000624856 447 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AL606534.2-204ENST00000635008 178 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 AC006504.1-201ENST00000562493 3666 ntBASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
TRIM39Q9HCM9 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.81
TRIM39Q9HCM9 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
TRIM39Q9HCM9 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.71□□□□□ -1.81
TRIM39Q9HCM9 AL161912.2-201ENST00000565707 3007 ntBASIC3.71□□□□□ -1.81
TRIM39Q9HCM9 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 RNU6-142P-201ENST00000384019 107 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 U8.11-201ENST00000384699 133 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 U8.12-201ENST00000384701 133 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 RNA5SP424-201ENST00000390988 115 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 RNU6-985P-201ENST00000410182 104 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 Y_RNA.605-201ENST00000410577 105 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 AC092423.1-201ENST00000430165 186 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 AC079354.2-201ENST00000453523 154 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 U8.18-201ENST00000459285 133 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 HSBP1P1-201ENST00000555205 166 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 MIR5701-3-201ENST00000578890 82 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 MIR5701-1-201ENST00000585138 82 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 RNU1-30P-201ENST00000606575 163 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 MIR5701-2-201ENST00000615634 82 ntBASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
TRIM39Q9HCM9 AC008669.1-201ENST00000565823 2178 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AC233981.2-201ENST00000611524 1614 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 RNU1-140P-201ENST00000365040 165 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 Y_RNA.424-201ENST00000384063 103 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 RNU6-968P-201ENST00000384076 107 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 RNU6-748P-201ENST00000384648 107 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 RNA5SP390-201ENST00000410191 113 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 SETP5-201ENST00000437270 562 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AC007969.2-201ENST00000441891 191 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 RPL23AP62-201ENST00000463396 453 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 TRBV12-2-201ENST00000489763 344 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 RNU6-764P-201ENST00000516396 105 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 RNU6-711P-201ENST00000517255 106 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 CKS1BP7-201ENST00000522230 235 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 AL121772.2-201ENST00000614331 297 ntBASIC3.7□□□□□ -1.82
TRIM39Q9HCM9 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms