Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MIR32-201ENST00000384965 70 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 HSPE1P26-201ENST00000405341 275 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AL603910.2-201ENST00000407268 136 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AL117339.2-201ENST00000430475 180 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 MTND2P29-201ENST00000438595 412 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 HMGB3P8-201ENST00000449709 577 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AC006517.1-201ENST00000480485 328 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 RPS23P5-201ENST00000495419 428 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AC025554.1-201ENST00000505641 188 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AC091874.1-201ENST00000511402 339 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 RNU6-1338P-201ENST00000516328 91 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AC022080.3-201ENST00000544433 482 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AL020997.2-201ENST00000602607 184 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 uc_338.32-201ENST00000615087 172 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AC011476.5-201ENST00000615594 130 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AC024581.2-201ENST00000619986 252 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AL450472.1-202ENST00000637286 180 ntBASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.82□□□□□ -1.8
PTCHD1Q96NR3 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.16-201ENST00000362421 102 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.54-201ENST00000362766 105 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 RNU6-1062P-201ENST00000383908 107 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.785-201ENST00000384290 109 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 SNORA37-201ENST00000384504 129 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.581-201ENST00000391017 97 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 MIR888-201ENST00000401186 77 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 RNU2-20P-201ENST00000410425 191 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 RNU2-14P-201ENST00000411053 191 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 RNA5SP39-201ENST00000411245 120 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 RNU5B-3P-201ENST00000516601 115 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.700-201ENST00000516806 100 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 RNU6-182P-201ENST00000516970 105 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 AC120057.2-201ENST00000571520 271 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 MIR3160-1-201ENST00000577972 85 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 MIR3690-201ENST00000580266 75 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 AC012468.1-201ENST00000604888 430 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 AC012603.1-201ENST00000606424 528 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 MIR6134-201ENST00000617606 109 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 AC008785.1-201ENST00000624475 456 ntBASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.81□□□□□ -1.8
PTCHD1Q96NR3 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 RNA5SP479-201ENST00000364858 117 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 RNU1-100P-201ENST00000365255 165 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 RNA5SP283-201ENST00000365604 119 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 RNU6-843P-201ENST00000384454 104 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.541-201ENST00000384640 113 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 MIR153-2-201ENST00000385225 87 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 MIR1193-201ENST00000408109 78 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 Y_RNA.602-201ENST00000410535 92 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AL691449.1-201ENST00000426570 421 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AC011742.1-201ENST00000431448 434 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AC087477.1-201ENST00000465747 340 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AF186996.7-201ENST00000492781 209 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 RN7SKP289-201ENST00000517244 295 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 RRN3P3-201ENST00000549207 578 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AC073657.2-201ENST00000605661 303 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 MIR6868-201ENST00000611215 58 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AC106871.1-201ENST00000568324 3102 ntBASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.8□□□□□ -1.8
PTCHD1Q96NR3 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 FAM35BP-202ENST00000497389 3337 ntBASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PTCHD1Q96NR3 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms