Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL359854.1-201ENST00000614203 1594 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 MTND5P30-201ENST00000452896 1731 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-1010P-201ENST00000362757 107 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 SNORD114-19-201ENST00000363072 75 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-1141P-201ENST00000364520 107 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC068538.1-201ENST00000376856 336 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-842P-201ENST00000384269 107 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-310P-201ENST00000384655 107 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RN7SKP156-201ENST00000410308 342 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-174P-201ENST00000410406 106 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 EIF4EP2-201ENST00000422816 654 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 USMG5P1-201ENST00000425964 177 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AL591419.1-201ENST00000427423 339 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RPL39P29-201ENST00000447779 157 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RPL30P15-201ENST00000457129 321 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RPL27AP5-201ENST00000469428 449 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RPL7P42-201ENST00000481005 679 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC105137.1-201ENST00000484355 562 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RN7SL604P-201ENST00000492589 296 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RPL22P13-201ENST00000493291 347 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 SCARNA17.1-201ENST00000516211 143 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 SNORA31.6-201ENST00000516241 130 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 SCARNA17.2-201ENST00000516334 143 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 MIR2276-201ENST00000516886 89 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-1213P-201ENST00000517075 94 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 MTCO3P13-201ENST00000577757 781 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 ARF4P1-201ENST00000605447 541 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC135507.2-201ENST00000612443 309 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 SCARNA17.4-201ENST00000614296 143 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC114781.5-201ENST00000615297 108 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 MIR8059-201ENST00000620427 81 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 MIR7703-201ENST00000620784 77 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC022149.2-201ENST00000621061 203 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AL160413.1-201ENST00000622780 310 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC011944.2-201ENST00000624440 683 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 AC009541.1-201ENST00000438279 2662 ntBASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC28AQ8IWP9 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 Y_RNA.123-201ENST00000363338 102 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RNA5SP399-201ENST00000364003 117 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 SNORD32A-201ENST00000364805 84 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 Y_RNA.404-201ENST00000383978 102 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-43P-201ENST00000384302 107 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-1140P-201ENST00000410517 106 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RNU2-23P-201ENST00000410545 195 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RPL23AP95-201ENST00000426806 265 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 AC018644.1-201ENST00000429934 551 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 AL031659.1-201ENST00000447075 539 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 ELOCP24-201ENST00000456370 334 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RNU7-152P-201ENST00000458982 64 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RPL30P12-201ENST00000474666 353 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RN7SL459P-201ENST00000481078 302 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 RPL36AP48-201ENST00000485521 314 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 SNORA31.9-201ENST00000516429 84 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 AC109329.1-201ENST00000518744 317 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 AC005899.2-201ENST00000584353 90 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 MIR7641-1-201ENST00000627518 61 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 AC092435.3-201ENST00000565538 3654 ntBASIC2.98□□□□□ -1.93
CCDC28AQ8IWP9 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 ACEA_U3.1-201ENST00000363057 217 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-784P-201ENST00000384330 106 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 MIR1289-1-201ENST00000408836 144 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 Y_RNA.646-201ENST00000410980 101 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 EIF1AXP1-201ENST00000419267 435 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AF228730.4-201ENST00000421457 183 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC112771.1-201ENST00000463581 102 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 SNRPGP7-201ENST00000469016 106 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC097473.1-201ENST00000508142 408 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 RN7SKP122-201ENST00000515923 296 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 CYCSP29-201ENST00000533731 318 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC079598.5-201ENST00000547460 117 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 MIR4765-201ENST00000585007 77 ntBASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC28AQ8IWP9 AL137843.1-201ENST00000605078 385 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms