| HOOK3 | Q86VS8 | RNU2-3P-201 | ENST00000410144 | 191 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | RNU4-46P-201 | ENST00000410818 | 138 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | HNRNPDLP1-201 | ENST00000412834 | 550 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AC000123.1-201 | ENST00000418215 | 516 nt | TSL 5 BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AL139413.1-201 | ENST00000421309 | 217 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | TTTY8-202 | ENST00000426035 | 518 nt | TSL 1 (best) BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | WARS2P1-201 | ENST00000429678 | 537 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | PCYT1B-AS1-201 | ENST00000432626 | 275 nt | TSL 2 BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | MTND4P32-201 | ENST00000437189 | 1237 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AC092802.2-202 | ENST00000444665 | 371 nt | TSL 5 BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AC132479.1-201 | ENST00000449160 | 144 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | TTTY8B-202 | ENST00000455570 | 518 nt | TSL 1 (best) BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AP001025.1-201 | ENST00000486139 | 332 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | SNORA31.23-201 | ENST00000517219 | 133 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | FAM92A-209 | ENST00000519679 | 538 nt | TSL 4 BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AP000873.5-201 | ENST00000533906 | 236 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AP002770.2-201 | ENST00000543613 | 532 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | BNIP3P6-201 | ENST00000549284 | 499 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AC009135.1-201 | ENST00000549303 | 776 nt | TSL 2 BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | LINC02461-201 | ENST00000553211 | 836 nt | TSL 3 BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AL391840.1-201 | ENST00000571144 | 367 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | RPS3AP23-202 | ENST00000574601 | 686 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AC073410.2-201 | ENST00000603240 | 332 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AL713866.2-201 | ENST00000603579 | 219 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AC008945.2-201 | ENST00000606056 | 604 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AC103810.6-201 | ENST00000606708 | 136 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | AC098614.4-201 | ENST00000607601 | 462 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | RMST_7.1-201 | ENST00000621935 | 268 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | CASC1-205 | ENST00000545133 | 2146 nt | APPRIS ALT2 TSL 2 BASIC | 2.41 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | LINC01684-201 | ENST00000415182 | 2176 nt | TSL 1 (best) BASIC | 2.4 | □□□□□ -2.02 | | |
| HOOK3 | Q86VS8 | CFHR4-204 | ENST00000608469 | 1601 nt | TSL 1 (best) BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL596028.1-201 | ENST00000326971 | 197 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | SNORA3A-201 | ENST00000364113 | 130 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RNA5SP37-201 | ENST00000365420 | 130 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | SNORA75-201 | ENST00000384158 | 137 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | SNORA51.11-201 | ENST00000384442 | 131 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RNU6-606P-201 | ENST00000384721 | 111 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | MIR95-201 | ENST00000385072 | 81 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RNU6-1140P-201 | ENST00000410517 | 106 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | CYCSP33-201 | ENST00000414485 | 327 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC093423.2-201 | ENST00000429074 | 437 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | MTCO2P11-201 | ENST00000431069 | 680 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL358934.1-201 | ENST00000432346 | 324 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC092839.1-201 | ENST00000433475 | 536 nt | TSL 4 BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC091133.1-201 | ENST00000435491 | 483 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | CKS1BP2-201 | ENST00000497342 | 240 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC026436.1-201 | ENST00000510537 | 270 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | LINC02500-201 | ENST00000512547 | 493 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | GTF2H2C-212 | ENST00000512736 | 832 nt | TSL 1 (best) BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC074344.1-201 | ENST00000512823 | 224 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC004054.1-201 | ENST00000515111 | 270 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AP000889.2-201 | ENST00000532684 | 490 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL356057.1-201 | ENST00000533798 | 831 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | SUB1P2-201 | ENST00000556401 | 297 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | UBE2Q2P8-201 | ENST00000560644 | 102 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | MIR4703-201 | ENST00000577728 | 79 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC110760.3-201 | ENST00000598794 | 467 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | CTSLP2-204 | ENST00000629029 | 392 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | OR5M1-202 | ENST00000641076 | 4302 nt | APPRIS P1 BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | THOC2-216 | ENST00000491737 | 4452 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | CHORDC1-205 | ENST00000529726 | 4805 nt | TSL 2 BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | WWP1-201 | ENST00000265428 | 3362 nt | APPRIS P1 TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | OGN-202 | ENST00000375561 | 2743 nt | APPRIS P1 TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | GSTA3-201 | ENST00000211122 | 902 nt | APPRIS P1 TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | OR5AK2-201 | ENST00000326855 | 996 nt | APPRIS P1 BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RNU4-82P-201 | ENST00000362443 | 140 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RNU6-715P-201 | ENST00000365204 | 103 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | S100A12-201 | ENST00000368737 | 518 nt | APPRIS P1 TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | MIR186-201 | ENST00000384988 | 86 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | OR9R1P-201 | ENST00000412200 | 877 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL513008.1-201 | ENST00000412701 | 161 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL592435.1-201 | ENST00000416401 | 469 nt | TSL 3 BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC074117.2-201 | ENST00000417130 | 397 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC008267.5-201 | ENST00000424928 | 265 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL669831.1-202 | ENST00000428504 | 417 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL589986.2-201 | ENST00000429352 | 397 nt | TSL 2 BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC005019.2-201 | ENST00000434321 | 359 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | HMGB1P31-201 | ENST00000437242 | 427 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | GTF2IP13-201 | ENST00000438487 | 386 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC016691.1-201 | ENST00000441321 | 413 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL161788.1-201 | ENST00000441805 | 169 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC124916.1-201 | ENST00000444020 | 547 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL138830.2-202 | ENST00000446358 | 786 nt | TSL 2 BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RPS3P1-201 | ENST00000456781 | 192 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | GMFBP1-201 | ENST00000467831 | 427 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC104435.1-201 | ENST00000483483 | 166 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC068781.1-201 | ENST00000488231 | 618 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | MTCO3P9-201 | ENST00000506989 | 781 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RPL23AP94-201 | ENST00000512518 | 302 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | Y_RNA.688-201 | ENST00000516565 | 95 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RNU6-1178P-201 | ENST00000516674 | 107 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC013417.1-201 | ENST00000549896 | 271 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL355076.2-202 | ENST00000553754 | 574 nt | TSL 4 BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | SNORD53-201 | ENST00000579969 | 78 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC090897.2-201 | ENST00000581715 | 130 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AL355297.2-201 | ENST00000604792 | 129 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | LINC02112-205 | ENST00000606744 | 236 nt | TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | DLEU2_1.1-201 | ENST00000612089 | 120 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | DLEU2_1.2-201 | ENST00000614667 | 120 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC022079.1-201 | ENST00000621546 | 602 nt | BASIC | 2.39 | □□□□□ -2.03 | | |