Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 MIR3126-201ENST00000577443 74 ntBASIC1.82□□□□□ -2.12
TRIM40Q6P9F5 MIR3915-201ENST00000578518 97 ntBASIC1.82□□□□□ -2.12
TRIM40Q6P9F5 NDUFA8P1-201ENST00000605525 367 ntBASIC1.82□□□□□ -2.12
TRIM40Q6P9F5 AC008121.3-201ENST00000618726 433 ntBASIC1.82□□□□□ -2.12
TRIM40Q6P9F5 AC138649.3-201ENST00000622154 254 ntBASIC1.82□□□□□ -2.12
TRIM40Q6P9F5 AL603839.4-201ENST00000624658 1005 ntBASIC1.82□□□□□ -2.12
TRIM40Q6P9F5 AL359851.1-201ENST00000569460 4997 ntBASIC1.82□□□□□ -2.12
TRIM40Q6P9F5 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 RNU6-371P-201ENST00000364283 108 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 RNY4P34-201ENST00000364779 95 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 RNU6-622P-201ENST00000384272 103 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 RNU2-20P-201ENST00000410425 191 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 UBE2V1P10-201ENST00000414685 269 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 EDDM3CP-201ENST00000415977 425 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 CYCSP46-201ENST00000423569 204 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 MTATP6P16-201ENST00000434543 526 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AL451074.3-201ENST00000437709 472 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC073614.1-201ENST00000438690 650 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 ART2BP-201ENST00000453501 499 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC116562.3-201ENST00000506136 177 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 Y_RNA.687-201ENST00000516558 91 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 RNU6-685P-201ENST00000517088 95 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 SNORA31.25-201ENST00000517242 134 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC090572.1-201ENST00000519251 160 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC068587.5-201ENST00000528506 175 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 MIR3682-201ENST00000581338 84 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 RPL30P11-203ENST00000598995 310 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 SNRPGP19-201ENST00000603826 189 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC090578.1-201ENST00000604955 591 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC098614.4-201ENST00000607601 462 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC008250.2-201ENST00000615261 205 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC007494.3-201ENST00000624660 743 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 AC008993.2-201ENST00000631744 806 ntBASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
TRIM40Q6P9F5 OR4G2P-201ENST00000328113 903 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 SNORD116-20-201ENST00000384529 92 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 MIR186-201ENST00000384988 86 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 MIR17-201ENST00000385012 84 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 MIR561-201ENST00000385216 97 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 SNORA46.1-201ENST00000391069 153 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AL591034.2-201ENST00000402839 359 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 RNA5SP489-201ENST00000410986 109 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 HMGN1P14-201ENST00000412459 517 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AIMP1P2-201ENST00000425294 312 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 GPM6BP3-201ENST00000442797 145 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AC055731.1-201ENST00000474387 401 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AP001025.1-201ENST00000486139 332 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AL158827.2-201ENST00000602494 330 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AL670379.4-201ENST00000605279 254 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AP001486.3-201ENST00000615334 372 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 uc_338.15-201ENST00000615470 191 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AC093648.1-201ENST00000623546 606 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AL359740.1-201ENST00000624340 592 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 AL691447.3-201ENST00000635020 330 ntBASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.8□□□□□ -2.12
TRIM40Q6P9F5 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 RNU4-21P-201ENST00000362802 126 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 SNORA25B-201ENST00000365507 128 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 RNU6-1032P-201ENST00000384100 107 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 RPL21P90-201ENST00000415692 466 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 PGBD4P6-201ENST00000421501 610 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AL365400.1-201ENST00000431854 640 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 MTCO3P5-201ENST00000433620 714 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC009961.2-201ENST00000435771 251 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC104058.1-201ENST00000448028 297 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 PSPHP1-201ENST00000450062 261 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC006026.2-201ENST00000457376 180 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 snoU109.1-201ENST00000459339 135 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC091965.2-201ENST00000512324 613 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 RNU1-86P-201ENST00000516108 154 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 RNU2-53P-201ENST00000516257 147 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 RNU1-107P-201ENST00000516617 154 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 SNORA31.23-201ENST00000517219 133 ntBASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.79□□□□□ -2.12
TRIM40Q6P9F5 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms