Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNU6-36P-201ENST00000384172 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-4P-201ENST00000384205 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-5P-201ENST00000384238 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-3P-201ENST00000384314 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-16P-201ENST00000384385 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-15P-201ENST00000384534 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-2-201ENST00000384627 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-29P-201ENST00000384637 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-9-201ENST00000384776 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-33P-201ENST00000384793 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 SAR1AP2-201ENST00000392696 594 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A3Q01955 MTCO1P39-201ENST00000426148 480 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 MTATP6P4-201ENST00000427725 675 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 AL592045.1-201ENST00000429867 352 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 AL353705.1-201ENST00000433468 480 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU1-86P-201ENST00000516108 154 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-397P-201ENST00000516226 104 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU1-107P-201ENST00000516617 154 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-570P-201ENST00000517051 105 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 AP003733.2-201ENST00000529409 171 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.43□□□□□ -1.86
COL4A3Q01955 AL355877.2-201ENST00000603670 358 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RAC1P9-201ENST00000604990 392 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-6P-201ENST00000606623 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 SDR42E1P4-201ENST00000620894 481 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 MIR7843-201ENST00000622274 79 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A3Q01955 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
COL4A3Q01955 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
COL4A3Q01955 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A3Q01955 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
COL4A3Q01955 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
COL4A3Q01955 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A3Q01955 AL359693.1-201ENST00000614959 2407 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A3Q01955 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.42□□□□□ -1.86
COL4A3Q01955 RNU6-1062P-201ENST00000383908 107 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 RNU6-611P-201ENST00000384276 104 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 Y_RNA.471-201ENST00000384312 102 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 RNU4-61P-201ENST00000411243 107 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A3Q01955 AL590664.1-201ENST00000448065 339 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 SUMO2P6-201ENST00000505273 288 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 AC008885.1-201ENST00000514930 301 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 ATP5F1P5-201ENST00000526403 760 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 AC107918.3-201ENST00000533272 382 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 AC090517.1-201ENST00000569307 266 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 AC004584.2-201ENST00000570407 410 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 SNORD84-203ENST00000584275 78 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 RNVU1-4-201ENST00000612985 164 ntBASIC3.42□□□□□ -1.86
COL4A3Q01955 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A3Q01955 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
COL4A3Q01955 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A3Q01955 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.42□□□□□ -1.86
COL4A3Q01955 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A3Q01955 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC3.42□□□□□ -1.86
COL4A3Q01955 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A3Q01955 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL4A3Q01955 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC3.41□□□□□ -1.86
COL4A3Q01955 AL450326.2-201ENST00000421913 1962 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 Y_RNA.478-201ENST00000384358 107 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL4A3Q01955 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.41□□□□□ -1.86
COL4A3Q01955 AC092423.1-201ENST00000430165 186 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 RN7SL863P-201ENST00000462370 296 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 HMGN2P13-201ENST00000476476 274 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 TRBVB-201ENST00000477100 408 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.41□□□□□ -1.86
COL4A3Q01955 RNA5SP471-201ENST00000516971 106 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 RNU6-1315P-201ENST00000517187 99 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.41□□□□□ -1.86
COL4A3Q01955 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.41□□□□□ -1.86
COL4A3Q01955 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.41□□□□□ -1.86
COL4A3Q01955 AC026333.2-201ENST00000542164 106 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 AL157871.3-201ENST00000557231 293 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.41□□□□□ -1.86
COL4A3Q01955 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.41□□□□□ -1.86
COL4A3Q01955 AC098826.3-201ENST00000603823 466 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.41□□□□□ -1.86
COL4A3Q01955 RMST_4.1-201ENST00000616886 107 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
COL4A3Q01955 ZNF299P-201ENST00000406845 1804 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 AC090971.4-201ENST00000560291 1800 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 AC009812.4-201ENST00000569134 1805 ntBASIC3.41□□□□□ -1.86
COL4A3Q01955 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
COL4A3Q01955 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL4A3Q01955 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.41□□□□□ -1.86
COL4A3Q01955 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.4□□□□□ -1.86
COL4A3Q01955 RNU5A-1-201ENST00000362698 116 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 RNU6-595P-201ENST00000363944 107 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 RNU6-395P-201ENST00000365662 106 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 SNORA68.2-201ENST00000391263 128 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.4□□□□□ -1.86
COL4A3Q01955 AL590135.1-201ENST00000422215 156 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.4□□□□□ -1.86
COL4A3Q01955 AC139712.2-201ENST00000424302 339 ntBASIC3.4□□□□□ -1.86
COL4A3Q01955 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.4□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms