Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC073073.1-201ENST00000493920 463 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 UBE2CP3-201ENST00000502715 450 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 AP004607.1-201ENST00000524456 203 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC4.19□□□□□ -1.74
COL8A1P27658 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.19□□□□□ -1.74
COL8A1P27658 MIR4724-201ENST00000579485 89 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 AL022401.1-201ENST00000619498 108 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.19□□□□□ -1.74
COL8A1P27658 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL8A1P27658 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL8A1P27658 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
COL8A1P27658 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.19□□□□□ -1.74
COL8A1P27658 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.19□□□□□ -1.74
COL8A1P27658 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL8A1P27658 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
COL8A1P27658 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL8A1P27658 AC073136.1-201ENST00000449426 2884 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 ADAM5-202ENST00000399789 1942 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 AC006206.1-201ENST00000544842 3387 ntBASIC4.19□□□□□ -1.74
COL8A1P27658 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL8A1P27658 AC010300.1-201ENST00000600671 5134 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL8A1P27658 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL8A1P27658 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
COL8A1P27658 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.18□□□□□ -1.74
COL8A1P27658 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
COL8A1P27658 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
COL8A1P27658 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL8A1P27658 SNORD46.1-201ENST00000364139 104 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 RN7SKP153-201ENST00000365026 316 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 Y_RNA.328-201ENST00000365208 113 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 U6atac.2-201ENST00000408644 118 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 RNA5SP317-201ENST00000410176 116 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 RNU6-628P-201ENST00000410675 107 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 RNA5SP31-201ENST00000411144 127 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 RNA5SP311-201ENST00000411290 116 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.18□□□□□ -1.74
COL8A1P27658 Z85995.1-201ENST00000415547 335 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AC074117.2-201ENST00000417130 397 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 MLLT10P1-201ENST00000418346 262 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AC099336.2-201ENST00000422457 254 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 RPL19P16-201ENST00000433839 588 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AL162591.2-201ENST00000449634 317 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.18□□□□□ -1.74
COL8A1P27658 AC099560.2-201ENST00000457554 255 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AC091179.3-201ENST00000474761 144 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AC016632.1-201ENST00000503994 196 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AC091868.1-201ENST00000508746 304 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.18□□□□□ -1.74
COL8A1P27658 RN7SKP19-201ENST00000516016 252 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 RN7SKP12-201ENST00000516275 143 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 RNA5SP315-201ENST00000516340 116 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 RNA5SP312-201ENST00000517068 116 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.18□□□□□ -1.74
COL8A1P27658 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL8A1P27658 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.18□□□□□ -1.74
COL8A1P27658 RN7SL176P-201ENST00000580352 264 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.18□□□□□ -1.74
COL8A1P27658 AL591034.3-201ENST00000605511 685 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AC091979.2-201ENST00000607514 214 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 AC015813.4-201ENST00000610469 179 ntBASIC4.18□□□□□ -1.74
COL8A1P27658 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.18□□□□□ -1.74
COL8A1P27658 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.18□□□□□ -1.74
COL8A1P27658 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
COL8A1P27658 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL8A1P27658 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
COL8A1P27658 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL8A1P27658 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.18□□□□□ -1.74
COL8A1P27658 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL8A1P27658 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL8A1P27658 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.17□□□□□ -1.74
COL8A1P27658 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.17□□□□□ -1.74
COL8A1P27658 NEAT1-202ENST00000501122 22743 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 RNA5SP223-201ENST00000365174 120 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 Y_RNA.368-201ENST00000365547 113 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 RNU6-820P-201ENST00000384273 107 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 RNA5SP372-201ENST00000390836 115 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 RPS29P17-201ENST00000430795 166 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 AC004386.2-201ENST00000441858 148 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 HMGN2P32-201ENST00000444648 269 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.17□□□□□ -1.74
COL8A1P27658 RNU5F-2P-201ENST00000516066 82 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 SNORA40.13-201ENST00000516379 120 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.17□□□□□ -1.74
COL8A1P27658 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL8A1P27658 AC018630.3-201ENST00000542637 96 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 AC006349.1-201ENST00000555526 235 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.17□□□□□ -1.74
COL8A1P27658 MIR6075-201ENST00000620782 95 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 AL023881.1-201ENST00000621088 301 ntBASIC4.17□□□□□ -1.74
COL8A1P27658 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL8A1P27658 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
COL8A1P27658 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.17□□□□□ -1.74
COL8A1P27658 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
COL8A1P27658 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL8A1P27658 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
COL8A1P27658 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL8A1P27658 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.17□□□□□ -1.74
COL8A1P27658 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.17□□□□□ -1.74
COL8A1P27658 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms