Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TNPO1P3-201ENST00000436471 2662 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.97□□□□□ -1.77
COL6A1P12109 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A1P12109 SDAD1P2-201ENST00000441308 2028 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
COL6A1P12109 RNU6-874P-201ENST00000362390 105 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 Y_RNA.210-201ENST00000364161 110 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 Y_RNA.307-201ENST00000365022 117 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
COL6A1P12109 SNORA36C-201ENST00000384289 132 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 MIR301A-201ENST00000385261 86 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 SNORD73A-201ENST00000386062 65 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 AL031121.1-201ENST00000406553 254 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 RNU6-174P-201ENST00000410406 106 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 AL513331.1-201ENST00000411908 397 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 BX276092.3-201ENST00000424182 230 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A1P12109 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.97□□□□□ -1.77
COL6A1P12109 Z75741.1-201ENST00000446793 314 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 AL031274.1-201ENST00000450334 232 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A1P12109 AC092798.1-201ENST00000458542 409 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.97□□□□□ -1.77
COL6A1P12109 AC105758.1-201ENST00000506038 399 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 SNORA40.14-201ENST00000516543 86 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 RNU7-4P-201ENST00000516961 62 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.97□□□□□ -1.77
COL6A1P12109 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.97□□□□□ -1.77
COL6A1P12109 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A1P12109 AC005357.1-201ENST00000588399 301 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 SNORD39.4-201ENST00000620099 78 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 AL512643.1-201ENST00000635735 524 ntBASIC3.97□□□□□ -1.77
COL6A1P12109 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL6A1P12109 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
COL6A1P12109 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.97□□□□□ -1.77
COL6A1P12109 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.97□□□□□ -1.77
COL6A1P12109 Y_RNA.257-201ENST00000364596 102 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 Y_RNA.324-201ENST00000365165 102 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 RNU6-1179P-201ENST00000384667 107 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
COL6A1P12109 RNA5SP306-201ENST00000411087 107 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AL353621.1-201ENST00000418219 243 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AL158071.1-201ENST00000430315 461 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC009237.8-201ENST00000445492 379 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 PCNPP5-201ENST00000452246 481 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC087588.1-201ENST00000462203 316 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.96□□□□□ -1.78
COL6A1P12109 RPL30P5-201ENST00000494923 336 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 APOOP4-201ENST00000513530 597 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 RNU6-388P-201ENST00000517012 105 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 RNU6-389P-201ENST00000517048 105 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.96□□□□□ -1.78
COL6A1P12109 IGHV3-76-201ENST00000522465 295 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.96□□□□□ -1.78
COL6A1P12109 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.96□□□□□ -1.78
COL6A1P12109 MIR3609-201ENST00000582661 80 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.96□□□□□ -1.78
COL6A1P12109 AL451007.1-201ENST00000595491 289 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC020914.4-201ENST00000597690 277 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC027309.3-201ENST00000623419 351 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC006386.2-201ENST00000624491 75 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC012005.1-201ENST00000624575 75 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 SNORA50A-202ENST00000629536 136 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
COL6A1P12109 MIR4272-201ENST00000635924 64 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL6A1P12109 AC008669.1-201ENST00000565823 2178 ntBASIC3.96□□□□□ -1.78
COL6A1P12109 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL6A1P12109 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL6A1P12109 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
COL6A1P12109 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
COL6A1P12109 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL6A1P12109 UBE2L2-201ENST00000254302 429 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 Y_RNA.106-201ENST00000363189 100 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 Y_RNA.288-201ENST00000364854 92 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 Y_RNA.526-201ENST00000384572 110 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 AL138885.1-201ENST00000405921 675 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 RNU6-1156P-201ENST00000410365 100 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 COTL1P1-201ENST00000422309 375 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 AL592045.1-201ENST00000429867 352 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 AL353997.1-201ENST00000432936 108 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.95□□□□□ -1.78
COL6A1P12109 AL031183.1-201ENST00000457667 207 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.95□□□□□ -1.78
COL6A1P12109 RPL27AP5-201ENST00000469428 449 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.95□□□□□ -1.78
COL6A1P12109 RPL21P13-201ENST00000488305 481 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 AC022447.4-201ENST00000504053 364 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 Y_RNA.715-201ENST00000517082 110 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 IGKV2-26-201ENST00000518305 343 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 AC099778.2-201ENST00000610904 211 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 MIR8062-201ENST00000621515 85 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 Z99571.1-201ENST00000636677 394 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.95□□□□□ -1.78
COL6A1P12109 MTND5P27-201ENST00000428871 1720 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.95□□□□□ -1.78
COL6A1P12109 AC233263.6-201ENST00000631132 1963 ntBASIC3.94□□□□□ -1.78
COL6A1P12109 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
COL6A1P12109 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms