Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSH5O43196 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC7.75□□□□□ -1.17
MSH5O43196 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC7.75□□□□□ -1.17
MSH5O43196 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC7.75□□□□□ -1.17
MSH5O43196 AL672167.1-203ENST00000641299 2975 ntBASIC7.74□□□□□ -1.17
MSH5O43196 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC7.74□□□□□ -1.17
MSH5O43196 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSH5O43196 RNA5SP375-201ENST00000362975 119 ntBASIC7.74□□□□□ -1.17
MSH5O43196 RNU6-829P-201ENST00000363700 112 ntBASIC7.74□□□□□ -1.17
MSH5O43196 MIR635-201ENST00000384830 98 ntBASIC7.74□□□□□ -1.17
MSH5O43196 RNU6-519P-201ENST00000410590 108 ntBASIC7.74□□□□□ -1.17
MSH5O43196 AL445685.2-201ENST00000422551 342 ntBASIC7.74□□□□□ -1.17
MSH5O43196 HMGN2P30-201ENST00000423237 256 ntBASIC7.74□□□□□ -1.17
MSH5O43196 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC7.74□□□□□ -1.17
MSH5O43196 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC7.74□□□□□ -1.17
MSH5O43196 RNU1-98P-201ENST00000458992 160 ntBASIC7.74□□□□□ -1.17
MSH5O43196 RPL36AP48-201ENST00000485521 314 ntBASIC7.74□□□□□ -1.17
MSH5O43196 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC7.74□□□□□ -1.17
MSH5O43196 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC7.74□□□□□ -1.17
MSH5O43196 AL136131.3-201ENST00000607600 188 ntBASIC7.74□□□□□ -1.17
MSH5O43196 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC7.74□□□□□ -1.17
MSH5O43196 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
MSH5O43196 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
MSH5O43196 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
MSH5O43196 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSH5O43196 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSH5O43196 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSH5O43196 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSH5O43196 SNORD115-28-201ENST00000363931 81 ntBASIC7.73□□□□□ -1.17
MSH5O43196 RNU6-1184P-201ENST00000384588 108 ntBASIC7.73□□□□□ -1.17
MSH5O43196 SDHCP2-201ENST00000398565 501 ntBASIC7.73□□□□□ -1.17
MSH5O43196 SNX2P2-201ENST00000424553 323 ntBASIC7.73□□□□□ -1.17
MSH5O43196 AL590383.1-201ENST00000428602 75 ntBASIC7.73□□□□□ -1.17
MSH5O43196 snoU109.6-201ENST00000516831 118 ntBASIC7.73□□□□□ -1.17
MSH5O43196 SNORA43.3-201ENST00000517240 103 ntBASIC7.73□□□□□ -1.17
MSH5O43196 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC7.73□□□□□ -1.17
MSH5O43196 MIR1297-201ENST00000637311 77 ntBASIC7.73□□□□□ -1.17
MSH5O43196 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
MSH5O43196 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC7.73□□□□□ -1.17
MSH5O43196 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.73□□□□□ -1.17
MSH5O43196 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
MSH5O43196 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC7.73□□□□□ -1.17
MSH5O43196 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSH5O43196 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSH5O43196 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSH5O43196 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC7.72□□□□□ -1.17
MSH5O43196 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
MSH5O43196 SNORA64.1-201ENST00000362600 132 ntBASIC7.72□□□□□ -1.17
MSH5O43196 SNORD38.1-201ENST00000363863 68 ntBASIC7.72□□□□□ -1.17
MSH5O43196 SNORA43.1-201ENST00000364863 140 ntBASIC7.72□□□□□ -1.17
MSH5O43196 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSH5O43196 Y_RNA.567-201ENST00000384736 106 ntBASIC7.72□□□□□ -1.17
MSH5O43196 RN7SL860P-201ENST00000473738 223 ntBASIC7.72□□□□□ -1.17
MSH5O43196 RN7SL30P-201ENST00000488416 306 ntBASIC7.72□□□□□ -1.17
MSH5O43196 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
MSH5O43196 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
MSH5O43196 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSH5O43196 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
MSH5O43196 AP001029.2-203ENST00000589795 4910 ntBASIC7.72□□□□□ -1.17
MSH5O43196 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSH5O43196 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
MSH5O43196 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
MSH5O43196 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.17
MSH5O43196 MIR342-201ENST00000362212 99 ntBASIC7.71□□□□□ -1.18
MSH5O43196 Y_RNA.253-201ENST00000364562 112 ntBASIC7.71□□□□□ -1.18
MSH5O43196 RNU6-808P-201ENST00000391233 108 ntBASIC7.71□□□□□ -1.18
MSH5O43196 RNU6-221P-201ENST00000459541 99 ntBASIC7.71□□□□□ -1.18
MSH5O43196 AC008953.1-201ENST00000497334 318 ntBASIC7.71□□□□□ -1.18
MSH5O43196 ACA59.2-201ENST00000517061 156 ntBASIC7.71□□□□□ -1.18
MSH5O43196 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC7.71□□□□□ -1.18
MSH5O43196 AL359075.3-201ENST00000613288 217 ntBASIC7.71□□□□□ -1.18
MSH5O43196 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.18
MSH5O43196 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC7.71□□□□□ -1.18
MSH5O43196 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC7.71□□□□□ -1.18
MSH5O43196 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.18
MSH5O43196 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSH5O43196 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSH5O43196 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSH5O43196 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
MSH5O43196 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
MSH5O43196 AC020656.2-201ENST00000613291 5309 ntBASIC7.7□□□□□ -1.18
MSH5O43196 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC7.7□□□□□ -1.18
MSH5O43196 Y_RNA.242-201ENST00000364473 110 ntBASIC7.7□□□□□ -1.18
MSH5O43196 MIR1286-201ENST00000408112 78 ntBASIC7.7□□□□□ -1.18
MSH5O43196 AC099677.2-201ENST00000436385 175 ntBASIC7.7□□□□□ -1.18
MSH5O43196 RNU7-25P-201ENST00000516544 62 ntBASIC7.7□□□□□ -1.18
MSH5O43196 AL049872.1-201ENST00000556323 322 ntBASIC7.7□□□□□ -1.18
MSH5O43196 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC7.7□□□□□ -1.18
MSH5O43196 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC7.7□□□□□ -1.18
MSH5O43196 AL139124.1-201ENST00000609123 421 ntBASIC7.7□□□□□ -1.18
MSH5O43196 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC7.7□□□□□ -1.18
MSH5O43196 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC7.7□□□□□ -1.18
MSH5O43196 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSH5O43196 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSH5O43196 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSH5O43196 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSH5O43196 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC7.69□□□□□ -1.18
MSH5O43196 MIR1290-201ENST00000408735 78 ntBASIC7.69□□□□□ -1.18
MSH5O43196 RPL37P18-201ENST00000411602 243 ntBASIC7.69□□□□□ -1.18
MSH5O43196 MIR1270-201ENST00000459320 83 ntBASIC7.69□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 160.2 ms