Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.92■□□□□ 0.94
NOD1Q9Y239 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.92■□□□□ 0.94
NOD1Q9Y239 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.92■□□□□ 0.94
NOD1Q9Y239 MCCD1P1-208ENST00000445732 328 ntBASIC20.92■□□□□ 0.94
NOD1Q9Y239 AC011498.5-201ENST00000592027 486 ntBASIC20.92■□□□□ 0.94
NOD1Q9Y239 AL121672.3-201ENST00000608644 468 ntBASIC20.92■□□□□ 0.94
NOD1Q9Y239 NPAP1P7-201ENST00000613027 823 ntBASIC20.92■□□□□ 0.94
NOD1Q9Y239 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
NOD1Q9Y239 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.92■□□□□ 0.94
NOD1Q9Y239 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.92■□□□□ 0.94
NOD1Q9Y239 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
NOD1Q9Y239 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.92■□□□□ 0.94
NOD1Q9Y239 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 SDHAP1-207ENST00000440850 2000 ntBASIC20.92■□□□□ 0.94
NOD1Q9Y239 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
NOD1Q9Y239 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.91■□□□□ 0.94
NOD1Q9Y239 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.91■□□□□ 0.94
NOD1Q9Y239 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.91■□□□□ 0.94
NOD1Q9Y239 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 TSSC2-201ENST00000450217 709 ntBASIC20.91■□□□□ 0.94
NOD1Q9Y239 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.91■□□□□ 0.94
NOD1Q9Y239 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.91■□□□□ 0.94
NOD1Q9Y239 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 AC099778.1-201ENST00000568593 1911 ntBASIC20.91■□□□□ 0.94
NOD1Q9Y239 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.91■□□□□ 0.94
NOD1Q9Y239 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.91■□□□□ 0.94
NOD1Q9Y239 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.91■□□□□ 0.94
NOD1Q9Y239 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
NOD1Q9Y239 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 AC092667.1-201ENST00000434301 2586 ntBASIC20.9■□□□□ 0.94
NOD1Q9Y239 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 AL023284.2-201ENST00000405850 579 ntBASIC20.9■□□□□ 0.94
NOD1Q9Y239 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.9■□□□□ 0.94
NOD1Q9Y239 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NOD1Q9Y239 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NOD1Q9Y239 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NOD1Q9Y239 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NOD1Q9Y239 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
NOD1Q9Y239 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
NOD1Q9Y239 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NOD1Q9Y239 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.89■□□□□ 0.93
NOD1Q9Y239 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.89■□□□□ 0.93
NOD1Q9Y239 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.89■□□□□ 0.93
NOD1Q9Y239 MIR3180-5-201ENST00000583743 153 ntBASIC20.89■□□□□ 0.93
NOD1Q9Y239 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.89■□□□□ 0.93
NOD1Q9Y239 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NOD1Q9Y239 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.89■□□□□ 0.93
NOD1Q9Y239 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.88■□□□□ 0.93
NOD1Q9Y239 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.88■□□□□ 0.93
NOD1Q9Y239 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.88■□□□□ 0.93
NOD1Q9Y239 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.88■□□□□ 0.93
NOD1Q9Y239 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NOD1Q9Y239 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms