Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 LINC00265-3P-201ENST00000447588 903 ntBASIC20.76■□□□□ 0.91
HIPK3Q9H422 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HIPK3Q9H422 AP000867.3-201ENST00000524675 377 ntBASIC20.76■□□□□ 0.91
HIPK3Q9H422 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HIPK3Q9H422 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HIPK3Q9H422 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 AC091304.2-201ENST00000564639 760 ntBASIC20.76■□□□□ 0.91
HIPK3Q9H422 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 AL121772.3-201ENST00000610840 674 ntBASIC20.76■□□□□ 0.91
HIPK3Q9H422 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.76■□□□□ 0.91
HIPK3Q9H422 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HIPK3Q9H422 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HIPK3Q9H422 AL512408.1-201ENST00000569378 2000 ntBASIC20.76■□□□□ 0.91
HIPK3Q9H422 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.76■□□□□ 0.91
HIPK3Q9H422 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.75■□□□□ 0.91
HIPK3Q9H422 ZNF815P-204ENST00000434898 1737 ntBASIC20.75■□□□□ 0.91
HIPK3Q9H422 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
HIPK3Q9H422 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HIPK3Q9H422 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HIPK3Q9H422 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.75■□□□□ 0.91
HIPK3Q9H422 MIR662-201ENST00000384847 95 ntBASIC20.75■□□□□ 0.91
HIPK3Q9H422 AL022342.1-201ENST00000400363 863 ntBASIC20.75■□□□□ 0.91
HIPK3Q9H422 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.75■□□□□ 0.91
HIPK3Q9H422 DRAXINP1-201ENST00000437611 948 ntBASIC20.75■□□□□ 0.91
HIPK3Q9H422 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.75■□□□□ 0.91
HIPK3Q9H422 TPSP2-201ENST00000561760 610 ntBASIC20.75■□□□□ 0.91
HIPK3Q9H422 LINC01711-201ENST00000598340 967 ntBASIC20.75■□□□□ 0.91
HIPK3Q9H422 GPALPP1-207ENST00000611650 899 ntBASIC20.75■□□□□ 0.91
HIPK3Q9H422 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.75■□□□□ 0.91
HIPK3Q9H422 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.75■□□□□ 0.91
HIPK3Q9H422 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HIPK3Q9H422 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.75■□□□□ 0.91
HIPK3Q9H422 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HIPK3Q9H422 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 AC073314.1-201ENST00000568729 2216 ntBASIC20.74■□□□□ 0.91
HIPK3Q9H422 AL391807.1-203ENST00000604392 2365 ntBASIC20.74■□□□□ 0.91
HIPK3Q9H422 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HIPK3Q9H422 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HIPK3Q9H422 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HIPK3Q9H422 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
HIPK3Q9H422 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 AL160237.2-201ENST00000556165 472 ntBASIC20.74■□□□□ 0.91
HIPK3Q9H422 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HIPK3Q9H422 AC104692.2-201ENST00000603054 253 ntBASIC20.74■□□□□ 0.91
HIPK3Q9H422 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 AC023511.2-201ENST00000618803 211 ntBASIC20.74■□□□□ 0.91
HIPK3Q9H422 AC112497.1-201ENST00000624824 639 ntBASIC20.74■□□□□ 0.91
HIPK3Q9H422 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HIPK3Q9H422 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HIPK3Q9H422 AC073130.3-201ENST00000624389 2278 ntBASIC20.74■□□□□ 0.91
HIPK3Q9H422 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.74■□□□□ 0.91
HIPK3Q9H422 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HIPK3Q9H422 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 AL391422.3-201ENST00000603791 2761 ntBASIC20.73■□□□□ 0.91
HIPK3Q9H422 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIPK3Q9H422 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HIPK3Q9H422 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.72■□□□□ 0.91
HIPK3Q9H422 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HIPK3Q9H422 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HIPK3Q9H422 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HIPK3Q9H422 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms