Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TIMP4Q99727 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TIMP4Q99727 AC004951.3-201ENST00000418645 1148 ntBASIC17.43■□□□□ 0.38
TIMP4Q99727 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.43■□□□□ 0.38
TIMP4Q99727 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.43■□□□□ 0.38
TIMP4Q99727 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.43■□□□□ 0.38
TIMP4Q99727 AL160286.2-201ENST00000567150 934 ntBASIC17.43■□□□□ 0.38
TIMP4Q99727 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.43■□□□□ 0.38
TIMP4Q99727 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.43■□□□□ 0.38
TIMP4Q99727 AC011298.2-201ENST00000617989 482 ntBASIC17.43■□□□□ 0.38
TIMP4Q99727 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.43■□□□□ 0.38
TIMP4Q99727 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TIMP4Q99727 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TIMP4Q99727 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TIMP4Q99727 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TIMP4Q99727 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TIMP4Q99727 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TIMP4Q99727 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.42■□□□□ 0.38
TIMP4Q99727 LINC01568-207ENST00000641790 1380 ntBASIC17.42■□□□□ 0.38
TIMP4Q99727 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
TIMP4Q99727 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.42■□□□□ 0.38
TIMP4Q99727 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TIMP4Q99727 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TIMP4Q99727 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TIMP4Q99727 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.42■□□□□ 0.38
TIMP4Q99727 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
TIMP4Q99727 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.42■□□□□ 0.38
TIMP4Q99727 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.42■□□□□ 0.38
TIMP4Q99727 CRYGFP-201ENST00000418459 633 ntBASIC17.42■□□□□ 0.38
TIMP4Q99727 AC008040.2-201ENST00000461049 708 ntBASIC17.42■□□□□ 0.38
TIMP4Q99727 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.42■□□□□ 0.38
TIMP4Q99727 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
TIMP4Q99727 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TIMP4Q99727 AP005242.2-201ENST00000580065 1175 ntBASIC17.42■□□□□ 0.38
TIMP4Q99727 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.42■□□□□ 0.38
TIMP4Q99727 AP000692.2-201ENST00000608391 879 ntBASIC17.42■□□□□ 0.38
TIMP4Q99727 AC010947.1-201ENST00000623454 693 ntBASIC17.42■□□□□ 0.38
TIMP4Q99727 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.42■□□□□ 0.38
TIMP4Q99727 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TIMP4Q99727 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
TIMP4Q99727 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TIMP4Q99727 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
TIMP4Q99727 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TIMP4Q99727 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
TIMP4Q99727 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.41■□□□□ 0.38
TIMP4Q99727 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TIMP4Q99727 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.41■□□□□ 0.38
TIMP4Q99727 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.41■□□□□ 0.38
TIMP4Q99727 Z85996.1-201ENST00000494644 937 ntBASIC17.41■□□□□ 0.38
TIMP4Q99727 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TIMP4Q99727 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
TIMP4Q99727 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.41■□□□□ 0.38
TIMP4Q99727 SLC25A1P4-201ENST00000567977 778 ntBASIC17.41■□□□□ 0.38
TIMP4Q99727 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.41■□□□□ 0.38
TIMP4Q99727 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TIMP4Q99727 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.41■□□□□ 0.38
TIMP4Q99727 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.41■□□□□ 0.38
TIMP4Q99727 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.41■□□□□ 0.38
TIMP4Q99727 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TIMP4Q99727 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
TIMP4Q99727 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TIMP4Q99727 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.41■□□□□ 0.38
TIMP4Q99727 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TIMP4Q99727 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TIMP4Q99727 AL049812.1-201ENST00000432563 2267 ntBASIC17.4■□□□□ 0.38
TIMP4Q99727 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.4■□□□□ 0.38
TIMP4Q99727 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.4■□□□□ 0.38
TIMP4Q99727 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.4■□□□□ 0.38
TIMP4Q99727 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.4■□□□□ 0.38
TIMP4Q99727 AC091390.4-202ENST00000476426 537 ntBASIC17.4■□□□□ 0.38
TIMP4Q99727 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.4■□□□□ 0.38
TIMP4Q99727 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.4■□□□□ 0.38
TIMP4Q99727 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 AL161938.1-201ENST00000569833 2180 ntBASIC17.4■□□□□ 0.38
TIMP4Q99727 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.4■□□□□ 0.38
TIMP4Q99727 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TIMP4Q99727 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms