Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC01521-201ENST00000504184 1943 ntBASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC23.27■■□□□ 1.32
CCDC88AQ3V6T2 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
CCDC88AQ3V6T2 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 AL121912.1-201ENST00000603683 238 ntBASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 TP73-AS1-207ENST00000624167 988 ntBASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 AP000867.3-201ENST00000524675 377 ntBASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 BX640515.1-201ENST00000617215 977 ntBASIC23.26■■□□□ 1.31
CCDC88AQ3V6T2 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 BUB3-202ENST00000368859 667 ntTSL 3 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 HMGN1P19-201ENST00000436976 333 ntBASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 AL157888.1-201ENST00000631930 593 ntBASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 EFS-203ENST00000429593 2610 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 ZNF815P-204ENST00000434898 1737 ntBASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC88AQ3V6T2 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 TEN1-204ENST00000588202 862 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 AC079602.3-201ENST00000623931 403 ntBASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 AF228730.7-201ENST00000641842 219 ntBASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 AC104417.2-201ENST00000562989 1793 ntBASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 FOSL1P1-201ENST00000511041 816 ntBASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 AL391807.1-203ENST00000604392 2365 ntBASIC23.24■■□□□ 1.31
CCDC88AQ3V6T2 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 IL9RP2-201ENST00000423948 1312 ntBASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 PMS2P1-201ENST00000431037 1228 ntBASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
CCDC88AQ3V6T2 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 BET1L-206ENST00000486280 665 ntTSL 3 BASIC23.22■■□□□ 1.31
CCDC88AQ3V6T2 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms