Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 FTO-215ENST00000636491 1676 ntTSL 5 BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 AC092490.3-201ENST00000545370 572 ntBASIC8.44□□□□□ -1.06
SENP3Q9H4L4 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC8.44□□□□□ -1.06
SENP3Q9H4L4 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 RNA5SP239-201ENST00000410218 129 ntBASIC8.43□□□□□ -1.06
SENP3Q9H4L4 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 AC006466.1-201ENST00000438721 289 ntBASIC8.43□□□□□ -1.06
SENP3Q9H4L4 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 AC073073.1-201ENST00000493920 463 ntBASIC8.43□□□□□ -1.06
SENP3Q9H4L4 FGF7P7-201ENST00000514120 227 ntBASIC8.43□□□□□ -1.06
SENP3Q9H4L4 ZNF861P-201ENST00000588126 639 ntBASIC8.43□□□□□ -1.06
SENP3Q9H4L4 NEAT1_2.1-201ENST00000620525 105 ntBASIC8.43□□□□□ -1.06
SENP3Q9H4L4 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
SENP3Q9H4L4 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 ICE2P2-201ENST00000483823 2787 ntBASIC8.42□□□□□ -1.06
SENP3Q9H4L4 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 RNU6-998P-201ENST00000515894 101 ntBASIC8.42□□□□□ -1.06
SENP3Q9H4L4 MIR4330-201ENST00000579077 105 ntBASIC8.42□□□□□ -1.06
SENP3Q9H4L4 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
SENP3Q9H4L4 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 SNORA32-201ENST00000384072 121 ntBASIC8.41□□□□□ -1.06
SENP3Q9H4L4 SNORA27-201ENST00000384323 126 ntBASIC8.41□□□□□ -1.06
SENP3Q9H4L4 RNU1-57P-201ENST00000384491 166 ntBASIC8.41□□□□□ -1.06
SENP3Q9H4L4 RNU1-77P-201ENST00000390868 162 ntBASIC8.41□□□□□ -1.06
SENP3Q9H4L4 SNRPGP14-201ENST00000435400 219 ntBASIC8.41□□□□□ -1.06
SENP3Q9H4L4 U3.44-201ENST00000458938 192 ntBASIC8.41□□□□□ -1.06
SENP3Q9H4L4 AC006116.3-201ENST00000592968 361 ntBASIC8.41□□□□□ -1.06
SENP3Q9H4L4 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
SENP3Q9H4L4 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
SENP3Q9H4L4 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC8.4□□□□□ -1.06
SENP3Q9H4L4 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
SENP3Q9H4L4 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
SENP3Q9H4L4 RNU6-335P-201ENST00000364563 113 ntBASIC8.4□□□□□ -1.06
SENP3Q9H4L4 AC016739.1-201ENST00000405359 345 ntBASIC8.4□□□□□ -1.06
SENP3Q9H4L4 MIR4480-201ENST00000582492 71 ntBASIC8.4□□□□□ -1.06
SENP3Q9H4L4 AC006065.5-201ENST00000623427 349 ntBASIC8.4□□□□□ -1.06
SENP3Q9H4L4 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC8.4□□□□□ -1.06
SENP3Q9H4L4 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC8.4□□□□□ -1.06
SENP3Q9H4L4 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
SENP3Q9H4L4 BBX-203ENST00000402543 3980 ntTSL 5 BASIC8.4□□□□□ -1.07
SENP3Q9H4L4 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.07
SENP3Q9H4L4 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
SENP3Q9H4L4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC8.4□□□□□ -1.07
SENP3Q9H4L4 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.07
SENP3Q9H4L4 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 AC010168.2-201ENST00000562691 5428 ntBASIC8.39□□□□□ -1.07
SENP3Q9H4L4 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 147.4 ms