Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL138976.2-201ENST00000563989 694 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AC025678.1-201ENST00000567861 338 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 MIR5583-1-201ENST00000580941 59 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
LIME1Q9H400 ZNF861P-201ENST00000588126 639 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.3□□□□□ -2.04
LIME1Q9H400 AC078899.3-201ENST00000599065 212 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 RPL23AP78-201ENST00000599928 470 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AL158827.2-201ENST00000602494 330 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AC025165.5-201ENST00000602802 578 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AC080078.2-201ENST00000603766 501 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AC090517.2-201ENST00000614966 680 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AC010378.1-201ENST00000619270 362 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AP003400.5-201ENST00000624827 617 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 AL691447.3-201ENST00000635020 330 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 MIR3199-2-201ENST00000636243 86 ntBASIC2.3□□□□□ -2.04
LIME1Q9H400 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
LIME1Q9H400 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LIME1Q9H400 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
LIME1Q9H400 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.29□□□□□ -2.04
LIME1Q9H400 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
LIME1Q9H400 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
LIME1Q9H400 MIR26A1-201ENST00000362205 77 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 Y_RNA.6-201ENST00000362350 114 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 RNU1-100P-201ENST00000365255 165 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 RNU6-898P-201ENST00000365627 104 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 SNORA69-201ENST00000383895 132 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 RNU6-72P-201ENST00000384285 79 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 CIR1P3-201ENST00000405137 479 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.29□□□□□ -2.04
LIME1Q9H400 AC016831.2-201ENST00000417179 352 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.29□□□□□ -2.04
LIME1Q9H400 UBBP3-201ENST00000445497 241 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.29□□□□□ -2.04
LIME1Q9H400 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.29□□□□□ -2.04
LIME1Q9H400 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.29□□□□□ -2.04
LIME1Q9H400 MTND3P25-201ENST00000509243 135 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.29□□□□□ -2.04
LIME1Q9H400 RNU6-1178P-201ENST00000516674 107 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.29□□□□□ -2.04
LIME1Q9H400 GLYCAM1-201ENST00000546596 285 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.29□□□□□ -2.04
LIME1Q9H400 AC092325.1-201ENST00000566449 554 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 U6.42-201ENST00000618440 107 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 MIR1321-201ENST00000637766 79 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 AC068137.3-201ENST00000639191 341 ntBASIC2.29□□□□□ -2.04
LIME1Q9H400 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.28□□□□□ -2.04
LIME1Q9H400 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.28□□□□□ -2.04
LIME1Q9H400 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.28□□□□□ -2.04
LIME1Q9H400 RNU6-942P-201ENST00000363002 107 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 RNU6-434P-201ENST00000384376 107 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 RNU6-393P-201ENST00000384475 107 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 MIR10A-201ENST00000385043 110 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 MIR514A2-201ENST00000385131 88 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 MIR514A3-201ENST00000385132 88 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 AF274854.1-201ENST00000413236 615 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 TOMM20P4-201ENST00000427861 435 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.28□□□□□ -2.04
LIME1Q9H400 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.28□□□□□ -2.04
LIME1Q9H400 AC112220.1-201ENST00000434628 355 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.28□□□□□ -2.04
LIME1Q9H400 Z96811.1-201ENST00000445880 108 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 AC092001.1-201ENST00000453012 261 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 BTF3P15-201ENST00000455606 336 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 SCARNA18-201ENST00000459004 134 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 AC090525.1-201ENST00000479116 478 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.28□□□□□ -2.04
LIME1Q9H400 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.28□□□□□ -2.04
LIME1Q9H400 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.28□□□□□ -2.04
LIME1Q9H400 RNU5F-8P-201ENST00000515941 111 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 SCARNA11.3-201ENST00000517276 130 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 OR5AQ1P-201ENST00000527596 927 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.28□□□□□ -2.04
LIME1Q9H400 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.28□□□□□ -2.04
LIME1Q9H400 AL121821.2-201ENST00000556081 394 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.28□□□□□ -2.04
LIME1Q9H400 AC005261.5-201ENST00000596280 355 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 AC068790.6-201ENST00000602558 258 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 AL355877.2-201ENST00000603670 358 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 AL359198.2-201ENST00000611836 194 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 uc_338.34-201ENST00000617467 174 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 SCARNA4-202ENST00000625402 129 ntBASIC2.28□□□□□ -2.04
LIME1Q9H400 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.28□□□□□ -2.04
LIME1Q9H400 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
LIME1Q9H400 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.28□□□□□ -2.04
LIME1Q9H400 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.28□□□□□ -2.04
LIME1Q9H400 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LIME1Q9H400 SNORA25.6-201ENST00000364121 118 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 SNORA68.1-201ENST00000364537 132 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 RNU4-20P-201ENST00000365601 151 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 RNU6-748P-201ENST00000384648 107 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 MIR764-201ENST00000390811 85 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 SNORD70.1-201ENST00000391007 85 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LIME1Q9H400 MIR1289-2-201ENST00000408360 111 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 U3.37-201ENST00000408528 213 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 C8orf59P1-201ENST00000429930 303 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms