Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AC090515.1-201ENST00000465295 476 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 RPS29P21-201ENST00000496272 170 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC117522.2-201ENST00000510049 657 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 CBX3P7-201ENST00000532876 502 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC245014.2-201ENST00000603689 287 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC246785.4-201ENST00000605374 287 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 SNORD14A-201ENST00000606526 91 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 RBBP8P1-201ENST00000449447 1844 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 RNU6-1010P-201ENST00000362757 107 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 MIR95-201ENST00000385072 81 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 RNU6-248P-201ENST00000410720 107 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 MTND1P23-201ENST00000416931 372 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 IPO7P1-201ENST00000442031 636 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 CALM1P1-201ENST00000442082 433 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC104058.1-201ENST00000448028 297 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC012308.1-201ENST00000451232 178 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 MTCYBP1-201ENST00000454315 1119 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC006026.2-201ENST00000457376 180 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 MTCO2P6-201ENST00000463134 685 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC064872.1-201ENST00000604823 1072 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AC021646.1-201ENST00000605469 484 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AL121917.1-203ENST00000605534 577 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 AL359740.1-201ENST00000624340 592 ntBASIC2.3□□□□□ -2.04
ZNF560Q96MR9 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF560Q96MR9 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 OR4G2P-201ENST00000328113 903 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 U3.4-201ENST00000363352 213 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 Y_RNA.367-201ENST00000365544 101 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 RNU6-74P-201ENST00000384235 107 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 RN7SKP32-201ENST00000410167 303 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 RN7SKP158-201ENST00000410453 326 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 RPL21P90-201ENST00000415692 466 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AL161788.1-201ENST00000441805 169 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AL513124.1-201ENST00000450410 614 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AC068781.1-201ENST00000488231 618 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AC140059.1-201ENST00000489238 361 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AC104806.1-201ENST00000508720 308 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 SNORA18.6-201ENST00000516792 115 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 IGKV3-31-201ENST00000523109 329 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.29□□□□□ -2.04
ZNF560Q96MR9 BNIP3P30-201ENST00000601184 574 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 CLIC4P2-201ENST00000601934 717 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 AL355297.2-201ENST00000604792 129 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 MIR98-201ENST00000606724 119 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 MIR219B-201ENST00000637023 88 ntBASIC2.29□□□□□ -2.04
ZNF560Q96MR9 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
ZNF560Q96MR9 SNORA3A-201ENST00000364113 130 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 RNU1-148P-201ENST00000384472 162 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 RNU1-57P-201ENST00000384491 166 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 RAP1BP3-201ENST00000407180 549 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 OR6C66P-201ENST00000414917 930 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.28□□□□□ -2.04
ZNF560Q96MR9 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.28□□□□□ -2.04
ZNF560Q96MR9 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.28□□□□□ -2.04
ZNF560Q96MR9 RPL31P35-201ENST00000431058 377 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 AL031659.1-201ENST00000447075 539 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 CKS1BP2-201ENST00000497342 240 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 AC098862.1-201ENST00000504991 413 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 SNORD27.1-201ENST00000516319 72 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 Y_RNA.687-201ENST00000516558 91 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.28□□□□□ -2.04
ZNF560Q96MR9 AL138976.2-201ENST00000563989 694 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 AL713866.2-201ENST00000603579 219 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 SEPT7P9-203ENST00000604116 343 ntBASIC2.28□□□□□ -2.04
ZNF560Q96MR9 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.04
ZNF560Q96MR9 RMST_4.1-201ENST00000616886 107 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms