Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC007919.1-201ENST00000429380 217 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC0.29□□□□□ -2.36
USF3Q68DE3 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC0.29□□□□□ -2.36
USF3Q68DE3 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
USF3Q68DE3 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC0.29□□□□□ -2.36
USF3Q68DE3 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC0.29□□□□□ -2.36
USF3Q68DE3 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC0.29□□□□□ -2.36
USF3Q68DE3 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
USF3Q68DE3 MZT1P2-201ENST00000604387 248 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 Z82243.1-201ENST00000609432 473 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC0.29□□□□□ -2.36
USF3Q68DE3 MIR4275-201ENST00000636486 87 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 RNU1-96P-201ENST00000364163 162 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 AL109755.1-201ENST00000401791 649 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 RNU6-77P-201ENST00000410554 91 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 RNU2-48P-201ENST00000410694 191 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 BTF3P8-201ENST00000414577 526 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 PNRC2P1-201ENST00000423940 420 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 AL135790.2-201ENST00000437701 267 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC0.29□□□□□ -2.36
USF3Q68DE3 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.29□□□□□ -2.36
USF3Q68DE3 AC002545.1-201ENST00000592511 181 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC0.29□□□□□ -2.36
USF3Q68DE3 AL022345.1-201ENST00000607292 135 ntBASIC0.29□□□□□ -2.36
USF3Q68DE3 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC0.28□□□□□ -2.36
USF3Q68DE3 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
USF3Q68DE3 AC139712.2-201ENST00000424302 339 ntBASIC0.28□□□□□ -2.36
USF3Q68DE3 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC0.28□□□□□ -2.36
USF3Q68DE3 AKIRIN2P1-201ENST00000505898 352 ntBASIC0.28□□□□□ -2.36
USF3Q68DE3 SNORA25.11-201ENST00000515935 105 ntBASIC0.28□□□□□ -2.36
USF3Q68DE3 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.28□□□□□ -2.36
USF3Q68DE3 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.28□□□□□ -2.36
USF3Q68DE3 AC093510.2-201ENST00000562820 896 ntBASIC0.28□□□□□ -2.36
USF3Q68DE3 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.28□□□□□ -2.36
USF3Q68DE3 SNORD39.3-201ENST00000584451 71 ntBASIC0.28□□□□□ -2.36
USF3Q68DE3 AL583856.2-201ENST00000606298 543 ntBASIC0.28□□□□□ -2.36
USF3Q68DE3 AL355802.4-201ENST00000607635 548 ntBASIC0.28□□□□□ -2.36
USF3Q68DE3 MTCO1P18-201ENST00000455518 1419 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 AC138393.1-203ENST00000327086 343 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
USF3Q68DE3 MIR302D-201ENST00000362275 68 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 RNU6-1164P-201ENST00000364428 107 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 MIR421-201ENST00000365696 85 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 RNU6-564P-201ENST00000410983 104 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 CCDC58P2-201ENST00000417131 366 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.28□□□□□ -2.37
USF3Q68DE3 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC0.28□□□□□ -2.37
USF3Q68DE3 OARD1-209ENST00000471367 401 ntTSL 2 BASIC0.28□□□□□ -2.37
USF3Q68DE3 AL049874.1-201ENST00000489560 388 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 COX6CP6-201ENST00000490840 228 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC0.28□□□□□ -2.37
USF3Q68DE3 RNU6-581P-201ENST00000516214 105 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC0.28□□□□□ -2.37
USF3Q68DE3 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC0.28□□□□□ -2.37
USF3Q68DE3 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.28□□□□□ -2.37
USF3Q68DE3 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC0.28□□□□□ -2.37
USF3Q68DE3 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC0.28□□□□□ -2.37
USF3Q68DE3 AC093249.1-201ENST00000567049 203 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 AC021171.1-201ENST00000603137 706 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 AL365434.2-201ENST00000607979 234 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 AL365204.3-201ENST00000612448 685 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.28□□□□□ -2.37
USF3Q68DE3 U6.101-201ENST00000637707 76 ntBASIC0.28□□□□□ -2.37
USF3Q68DE3 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.27□□□□□ -2.37
USF3Q68DE3 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
USF3Q68DE3 RNU5E-1-201ENST00000362477 120 ntBASIC0.27□□□□□ -2.37
USF3Q68DE3 Y_RNA.518-201ENST00000384552 113 ntBASIC0.27□□□□□ -2.37
USF3Q68DE3 MTCO1P56-201ENST00000401674 224 ntBASIC0.27□□□□□ -2.37
USF3Q68DE3 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.27□□□□□ -2.37
USF3Q68DE3 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC0.27□□□□□ -2.37
USF3Q68DE3 AC244023.1-201ENST00000426884 112 ntBASIC0.27□□□□□ -2.37
USF3Q68DE3 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.27□□□□□ -2.37
USF3Q68DE3 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
USF3Q68DE3 HSPE1P13-201ENST00000451143 297 ntBASIC0.27□□□□□ -2.37
USF3Q68DE3 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.27□□□□□ -2.37
USF3Q68DE3 PTP4A1P4-201ENST00000512479 322 ntBASIC0.27□□□□□ -2.37
USF3Q68DE3 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.27□□□□□ -2.37
USF3Q68DE3 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC0.27□□□□□ -2.37
USF3Q68DE3 AC242498.1-201ENST00000604134 111 ntBASIC0.27□□□□□ -2.37
USF3Q68DE3 AC243994.1-201ENST00000618627 109 ntBASIC0.27□□□□□ -2.37
USF3Q68DE3 AC073569.3-201ENST00000619055 682 ntBASIC0.27□□□□□ -2.37
USF3Q68DE3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
USF3Q68DE3 RNU6-1339P-201ENST00000363574 91 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 RNU6-968P-201ENST00000384076 107 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 MRPS36P1-201ENST00000421291 307 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.26□□□□□ -2.37
USF3Q68DE3 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.26□□□□□ -2.37
USF3Q68DE3 MTND4P6-201ENST00000438297 472 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 AL050341.1-201ENST00000447743 313 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 PSMC1P5-201ENST00000512850 177 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 BNIP3P24-201ENST00000593398 557 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 AC004805.2-201ENST00000605382 482 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC0.26□□□□□ -2.37
USF3Q68DE3 MIR1912-201ENST00000410389 80 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 TRIM60P5Y-201ENST00000413946 574 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 AC132479.1-201ENST00000449160 144 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 RPL31P3-201ENST00000458430 332 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 RNA5SP290-201ENST00000517133 127 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 NRON-201ENST00000517270 370 ntBASIC0.26□□□□□ -2.37
USF3Q68DE3 AC109329.1-201ENST00000518744 317 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms