Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNU6-1097P-201ENST00000363586 107 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 RNU4-66P-201ENST00000365199 138 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 RNA5SP190-201ENST00000365222 118 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 Y_RNA.384-201ENST00000383909 102 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 SNORA51.6-201ENST00000384151 125 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 RNU6-574P-201ENST00000384265 107 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 AC068050.1-201ENST00000394891 380 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 RPS15AP12-201ENST00000419498 388 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 AL358176.2-201ENST00000425769 204 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 PPP1R2P5-201ENST00000457256 603 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.13□□□□□ -2.07
COL4A4P53420 RPS29P11-201ENST00000496507 171 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.13□□□□□ -2.07
COL4A4P53420 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.13□□□□□ -2.07
COL4A4P53420 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.13□□□□□ -2.07
COL4A4P53420 RNU4-49P-201ENST00000516080 140 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 RNU6-150P-201ENST00000516237 95 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 SNORA48.10-201ENST00000516965 160 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.13□□□□□ -2.07
COL4A4P53420 IGHV3-76-201ENST00000522465 295 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.13□□□□□ -2.07
COL4A4P53420 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.13□□□□□ -2.07
COL4A4P53420 HSPE1P3-201ENST00000559254 309 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 LRRC37A5P-203ENST00000580181 585 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC2.13□□□□□ -2.07
COL4A4P53420 VN1R107P-201ENST00000601784 209 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 AC068790.3-201ENST00000602988 553 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 PSMA6P4-201ENST00000603247 718 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 AC121334.2-201ENST00000605387 271 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 OR10AB1P-201ENST00000609613 938 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.13□□□□□ -2.07
COL4A4P53420 U6.101-201ENST00000637707 76 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 MIR1302-1-201ENST00000637932 143 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 AC114546.3-201ENST00000623582 1734 ntBASIC2.13□□□□□ -2.07
COL4A4P53420 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
COL4A4P53420 Y_RNA.202-201ENST00000364083 110 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 Y_RNA.231-201ENST00000364358 102 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 Y_RNA.301-201ENST00000364990 103 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
COL4A4P53420 RNU6-769P-201ENST00000384407 104 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 SNORD116-29-201ENST00000384516 83 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 RNU6-907P-201ENST00000390924 102 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AL627390.1-201ENST00000396055 340 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 RNU2-28P-201ENST00000410457 189 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 RNU2-39P-201ENST00000410604 198 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AL133384.1-201ENST00000412744 351 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 RPL7P46-201ENST00000425129 740 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC137499.1-201ENST00000427602 88 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 USP9YP16-201ENST00000430287 407 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 RPL31P35-201ENST00000431058 377 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AL606489.2-201ENST00000433886 234 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 NDUFA5P7-201ENST00000452914 242 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 USP9YP23-201ENST00000455085 407 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC022861.1-201ENST00000522981 663 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC004817.2-201ENST00000561794 651 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC005668.1-201ENST00000571142 476 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 MIR4303-201ENST00000581299 66 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC136443.5-201ENST00000603741 370 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC016925.2-201ENST00000605108 242 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 BCRP9-201ENST00000605312 388 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC093913.1-201ENST00000614178 329 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC084781.2-201ENST00000615568 161 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 AP002907.1-201ENST00000606361 1430 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 SNORA22B-201ENST00000383876 138 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 RNU1-39P-201ENST00000383897 165 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 Y_RNA.445-201ENST00000384168 102 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 RNU6-463P-201ENST00000384340 107 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 MIR320B1-201ENST00000390209 79 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 Y_RNA.605-201ENST00000410577 105 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AP000275.1-201ENST00000411943 390 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AP1B1P2-201ENST00000416196 106 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC018630.2-202ENST00000422992 927 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC024082.2-201ENST00000434771 238 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.12□□□□□ -2.07
COL4A4P53420 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.12□□□□□ -2.07
COL4A4P53420 FABP5P13-201ENST00000452144 328 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 HMGN3P1-201ENST00000453847 193 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 BTF3P15-201ENST00000455606 336 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 RNU6-717P-201ENST00000459076 104 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC073901.1-201ENST00000462471 408 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC021146.2-201ENST00000504736 556 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.12□□□□□ -2.07
COL4A4P53420 SNORA31.15-201ENST00000516771 132 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.12□□□□□ -2.07
COL4A4P53420 AC008562.1-201ENST00000521763 330 ntBASIC2.12□□□□□ -2.07
COL4A4P53420 AC123904.2-201ENST00000548059 300 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms