Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NDUFB4P7-201ENST00000423198 363 ntBASIC3.58□□□□□ -1.84
MSX2P35548 RPL27AP8-201ENST00000424277 446 ntBASIC3.58□□□□□ -1.84
MSX2P35548 AL627311.1-201ENST00000431514 115 ntBASIC3.58□□□□□ -1.84
MSX2P35548 RPS29P27-201ENST00000463711 170 ntBASIC3.58□□□□□ -1.84
MSX2P35548 RN7SKP21-201ENST00000516503 220 ntBASIC3.58□□□□□ -1.84
MSX2P35548 RNU6-1256P-201ENST00000516539 103 ntBASIC3.58□□□□□ -1.84
MSX2P35548 AC004024.1-201ENST00000549244 247 ntBASIC3.58□□□□□ -1.84
MSX2P35548 AMZ2P1-203ENST00000565833 850 ntBASIC3.58□□□□□ -1.84
MSX2P35548 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.58□□□□□ -1.84
MSX2P35548 AC006557.5-201ENST00000603126 811 ntBASIC3.58□□□□□ -1.84
MSX2P35548 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.58□□□□□ -1.84
MSX2P35548 RNVU1-4-201ENST00000612985 164 ntBASIC3.58□□□□□ -1.84
MSX2P35548 AC090132.2-201ENST00000615881 347 ntBASIC3.58□□□□□ -1.84
MSX2P35548 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
MSX2P35548 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.58□□□□□ -1.84
MSX2P35548 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
MSX2P35548 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
MSX2P35548 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSX2P35548 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
MSX2P35548 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
MSX2P35548 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
MSX2P35548 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
MSX2P35548 RLIMP1-201ENST00000339626 1680 ntBASIC3.57□□□□□ -1.84
MSX2P35548 RNU1-76P-201ENST00000362903 159 ntBASIC3.57□□□□□ -1.84
MSX2P35548 Y_RNA.478-201ENST00000384358 107 ntBASIC3.57□□□□□ -1.84
MSX2P35548 SNORA40C-201ENST00000391285 128 ntBASIC3.57□□□□□ -1.84
MSX2P35548 AP000567.1-201ENST00000406413 156 ntBASIC3.57□□□□□ -1.84
MSX2P35548 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
MSX2P35548 RNU4-61P-201ENST00000411243 107 ntBASIC3.57□□□□□ -1.84
MSX2P35548 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.57□□□□□ -1.84
MSX2P35548 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.57□□□□□ -1.84
MSX2P35548 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.57□□□□□ -1.84
MSX2P35548 RNU7-170P-201ENST00000459303 61 ntBASIC3.57□□□□□ -1.84
MSX2P35548 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
MSX2P35548 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.57□□□□□ -1.84
MSX2P35548 AL160314.1-201ENST00000490836 438 ntBASIC3.57□□□□□ -1.84
MSX2P35548 AC074250.1-201ENST00000511117 192 ntBASIC3.57□□□□□ -1.84
MSX2P35548 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.57□□□□□ -1.84
MSX2P35548 RNU6-111P-201ENST00000517179 105 ntBASIC3.57□□□□□ -1.84
MSX2P35548 RN7SKP40-201ENST00000517211 242 ntBASIC3.57□□□□□ -1.84
MSX2P35548 AC025755.1-201ENST00000521306 278 ntBASIC3.57□□□□□ -1.84
MSX2P35548 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.57□□□□□ -1.84
MSX2P35548 AC022695.1-201ENST00000522089 237 ntBASIC3.57□□□□□ -1.84
MSX2P35548 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.57□□□□□ -1.84
MSX2P35548 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.57□□□□□ -1.84
MSX2P35548 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.57□□□□□ -1.84
MSX2P35548 AC002546.1-201ENST00000588041 2504 ntBASIC3.57□□□□□ -1.84
MSX2P35548 KLKP1-201ENST00000595979 403 ntBASIC3.57□□□□□ -1.84
MSX2P35548 AC008121.1-201ENST00000603244 268 ntBASIC3.57□□□□□ -1.84
MSX2P35548 SRGNP1-201ENST00000603392 451 ntBASIC3.57□□□□□ -1.84
MSX2P35548 MIR6716-201ENST00000613413 80 ntBASIC3.57□□□□□ -1.84
MSX2P35548 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
MSX2P35548 AP001282.2-201ENST00000616149 309 ntBASIC3.57□□□□□ -1.84
MSX2P35548 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
MSX2P35548 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
MSX2P35548 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.57□□□□□ -1.84
MSX2P35548 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
MSX2P35548 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.56□□□□□ -1.84
MSX2P35548 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSX2P35548 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
MSX2P35548 RNU6-212P-201ENST00000362642 104 ntBASIC3.56□□□□□ -1.84
MSX2P35548 Y_RNA.245-201ENST00000364493 95 ntBASIC3.56□□□□□ -1.84
MSX2P35548 RNU6-1062P-201ENST00000383908 107 ntBASIC3.56□□□□□ -1.84
MSX2P35548 MIR10A-201ENST00000385043 110 ntBASIC3.56□□□□□ -1.84
MSX2P35548 PTMAP5-201ENST00000393073 333 ntBASIC3.56□□□□□ -1.84
MSX2P35548 RNU2-33P-201ENST00000410344 192 ntBASIC3.56□□□□□ -1.84
MSX2P35548 AL590135.1-201ENST00000422215 156 ntBASIC3.56□□□□□ -1.84
MSX2P35548 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.56□□□□□ -1.84
MSX2P35548 RN7SL303P-201ENST00000469773 251 ntBASIC3.56□□□□□ -1.84
MSX2P35548 AC098869.1-201ENST00000481627 292 ntBASIC3.56□□□□□ -1.84
MSX2P35548 UBE2CP3-201ENST00000502715 450 ntBASIC3.56□□□□□ -1.84
MSX2P35548 RNU6-138P-201ENST00000515952 107 ntBASIC3.56□□□□□ -1.84
MSX2P35548 RNU6-612P-201ENST00000516909 102 ntBASIC3.56□□□□□ -1.84
MSX2P35548 AC022080.3-201ENST00000544433 482 ntBASIC3.56□□□□□ -1.84
MSX2P35548 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.56□□□□□ -1.84
MSX2P35548 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.56□□□□□ -1.84
MSX2P35548 AC006077.1-201ENST00000604746 343 ntBASIC3.56□□□□□ -1.84
MSX2P35548 ARF4P1-201ENST00000605447 541 ntBASIC3.56□□□□□ -1.84
MSX2P35548 AC005046.1-201ENST00000608515 625 ntBASIC3.56□□□□□ -1.84
MSX2P35548 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.56□□□□□ -1.84
MSX2P35548 U6.98-201ENST00000637157 84 ntBASIC3.56□□□□□ -1.84
MSX2P35548 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
MSX2P35548 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
MSX2P35548 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.56□□□□□ -1.84
MSX2P35548 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSX2P35548 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.56□□□□□ -1.84
MSX2P35548 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.56□□□□□ -1.84
MSX2P35548 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.55□□□□□ -1.84
MSX2P35548 AP001148.1-201ENST00000624124 2359 ntBASIC3.55□□□□□ -1.84
MSX2P35548 CEP170P1-201ENST00000502249 4587 ntBASIC3.55□□□□□ -1.84
MSX2P35548 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSX2P35548 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.55□□□□□ -1.84
MSX2P35548 Y_RNA.20-201ENST00000362479 113 ntBASIC3.55□□□□□ -1.84
MSX2P35548 Y_RNA.27-201ENST00000362540 103 ntBASIC3.55□□□□□ -1.84
MSX2P35548 RNU6-428P-201ENST00000362942 107 ntBASIC3.55□□□□□ -1.84
MSX2P35548 RNA5SP509-201ENST00000364577 119 ntBASIC3.55□□□□□ -1.84
MSX2P35548 RNU6-200P-201ENST00000364743 107 ntBASIC3.55□□□□□ -1.84
MSX2P35548 RNU6-166P-201ENST00000384371 107 ntBASIC3.55□□□□□ -1.84
MSX2P35548 MIR199A2-201ENST00000385289 110 ntBASIC3.55□□□□□ -1.84
MSX2P35548 AL591034.1-201ENST00000407447 340 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms