Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNU6-432P-201ENST00000384196 109 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC4P09017 TXNP7-201ENST00000406296 293 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 SNORA11.4-201ENST00000408823 129 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 RNU6-908P-201ENST00000410160 94 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 UBE2FP1-201ENST00000416536 447 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AL109913.1-201ENST00000421173 514 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXC4P09017 TIMM9P3-201ENST00000428659 274 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXC4P09017 GPR143P-201ENST00000434155 205 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXC4P09017 AL031659.1-201ENST00000447075 539 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXC4P09017 AC108059.3-201ENST00000456388 214 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 RPL26P9-201ENST00000457466 433 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 RNU7-59P-201ENST00000459101 61 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC4P09017 RPS29P25-201ENST00000481709 171 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC090096.1-201ENST00000489168 390 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC079382.1-201ENST00000493346 557 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 YWHAEP4-201ENST00000505390 198 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXC4P09017 HMGB3P3-201ENST00000510526 400 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 RNU6-1178P-201ENST00000516674 107 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 SCARNA11.3-201ENST00000517276 130 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AP000889.2-201ENST00000532684 490 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.15□□□□□ -2.07
HOXC4P09017 AL157687.1-201ENST00000554853 619 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXC4P09017 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXC4P09017 MIR548S-201ENST00000581352 82 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 MIR3117-201ENST00000584034 78 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC098848.2-201ENST00000588023 330 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.15□□□□□ -2.07
HOXC4P09017 AC004908.2-201ENST00000609090 574 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 SDR42E1P2-201ENST00000614861 481 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC010133.1-201ENST00000615809 842 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC002553.4-201ENST00000616896 331 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC4P09017 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXC4P09017 MIR1321-201ENST00000637766 79 ntBASIC2.15□□□□□ -2.07
HOXC4P09017 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXC4P09017 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.14□□□□□ -2.07
HOXC4P09017 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
HOXC4P09017 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HOXC4P09017 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HOXC4P09017 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HOXC4P09017 RNU1-51P-201ENST00000365345 176 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 Y_RNA.367-201ENST00000365544 101 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 RNU6-108P-201ENST00000365558 107 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 RNU6-278P-201ENST00000390945 109 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AL079342.1-201ENST00000401460 267 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC114491.1-201ENST00000416095 246 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 MTATP6P16-201ENST00000434543 526 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 RPS15AP5-201ENST00000436276 388 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXC4P09017 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.14□□□□□ -2.07
HOXC4P09017 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 AC107626.1-201ENST00000471084 183 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC092436.1-201ENST00000506450 503 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.14□□□□□ -2.07
HOXC4P09017 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.14□□□□□ -2.07
HOXC4P09017 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 RNU6-1281P-201ENST00000516223 105 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 RNU6-835P-201ENST00000516974 104 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 AP003072.2-201ENST00000527756 676 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC109635.3-201ENST00000529536 185 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 AP003034.1-201ENST00000534621 422 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC087241.2-201ENST00000535801 324 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.14□□□□□ -2.07
HOXC4P09017 AC008752.3-201ENST00000588113 712 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXC4P09017 AC136601.2-201ENST00000604356 474 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC007363.1-201ENST00000604736 620 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXC4P09017 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXC4P09017 TUG1_2.1-201ENST00000614234 87 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 AC093648.1-201ENST00000623546 606 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 MIR7515-201ENST00000637837 67 ntBASIC2.14□□□□□ -2.07
HOXC4P09017 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HOXC4P09017 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.14□□□□□ -2.07
HOXC4P09017 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HOXC4P09017 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
HOXC4P09017 AC005336.3-201ENST00000623833 2679 ntBASIC2.13□□□□□ -2.07
HOXC4P09017 RNU6-1120P-201ENST00000362988 108 ntBASIC2.13□□□□□ -2.07
HOXC4P09017 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
HOXC4P09017 MIR558-201ENST00000384920 94 ntBASIC2.13□□□□□ -2.07
HOXC4P09017 RNU4-26P-201ENST00000410270 107 ntBASIC2.13□□□□□ -2.07
HOXC4P09017 RNU2-62P-201ENST00000410868 191 ntBASIC2.13□□□□□ -2.07
HOXC4P09017 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.13□□□□□ -2.07
HOXC4P09017 WARS2P1-201ENST00000429678 537 ntBASIC2.13□□□□□ -2.07
HOXC4P09017 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms