Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PSMD10P3-201ENST00000437000 448 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC005154.2-201ENST00000438110 379 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC008267.6-201ENST00000441664 139 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC020593.1-201ENST00000507399 299 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-1282P-201ENST00000516735 96 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC024940.4-201ENST00000605507 246 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 MIR6798-201ENST00000612887 67 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC092628.2-201ENST00000622492 339 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 U2.21-201ENST00000637295 81 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC125257.1-201ENST00000560400 2930 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AC018529.3-201ENST00000624212 2254 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AL133412.1-201ENST00000380194 2992 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RN7SKP103-201ENST00000363848 320 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 Y_RNA.182-201ENST00000363880 111 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RNA5SP189-201ENST00000364920 115 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 Y_RNA.357-201ENST00000365487 109 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-898P-201ENST00000365627 104 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-217P-201ENST00000384164 104 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-1145P-201ENST00000384246 107 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 MIR585-201ENST00000384887 94 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RNA5SP372-201ENST00000390836 115 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AC009237.10-201ENST00000414112 510 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 SCARNA10-201ENST00000459255 330 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RPL23AP14-201ENST00000468281 468 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AC114982.1-201ENST00000469402 321 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RPL30P5-201ENST00000494923 336 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AC078918.1-201ENST00000498515 228 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AC005921.1-201ENST00000510589 286 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AC016256.1-201ENST00000547971 354 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AC020895.1-201ENST00000595362 272 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AL356157.2-201ENST00000605122 111 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AC024581.2-201ENST00000619986 252 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 AL391516.1-201ENST00000554380 2449 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 RAD17P1-201ENST00000418130 2042 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 SDAD1P1-202ENST00000524156 2051 ntBASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HIF3AQ9Y2N7 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 Y_RNA.7-201ENST00000362352 102 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-778P-201ENST00000363269 103 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 RNU4-84P-201ENST00000364200 139 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 Y_RNA.238-201ENST00000364441 102 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 SNORA72.2-201ENST00000365028 127 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-142P-201ENST00000384019 107 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 MIR569-201ENST00000385228 96 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-159P-201ENST00000391080 106 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 RPL26P27-201ENST00000414397 437 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 AC005042.3-201ENST00000453230 174 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 AP000873.1-201ENST00000463987 400 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 AC022795.1-201ENST00000473808 480 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 RN7SL41P-201ENST00000476144 297 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 MIR4646-201ENST00000580775 63 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 AL133393.1-201ENST00000603277 287 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 AC091979.2-201ENST00000607514 214 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 AL008718.3-201ENST00000610217 321 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 Mico1.1-201ENST00000611698 204 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 uc_338.18-201ENST00000615451 175 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 Y_RNA.778-201ENST00000620203 90 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 U3.53-201ENST00000628922 216 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 SNORA43.4-201ENST00000629559 138 ntBASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HIF3AQ9Y2N7 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms