Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.58□□□□□ -2
CCDC3Q9BQI4 AL732372.2-207ENST00000445840 183 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 SEPT14P2-201ENST00000453405 183 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC090525.1-201ENST00000479116 478 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC011005.2-201ENST00000487324 359 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 MTAPP1-201ENST00000489154 819 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.58□□□□□ -2
CCDC3Q9BQI4 MTCO3P9-201ENST00000506989 781 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC008413.1-201ENST00000511864 177 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 SEPT14P4-201ENST00000513445 186 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 SNORD60.2-201ENST00000516883 86 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 FO082796.1-201ENST00000523795 183 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC006199.1-201ENST00000548728 219 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC019159.1-201ENST00000605094 187 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC005046.1-201ENST00000608515 625 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC090517.2-201ENST00000614966 680 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.58□□□□□ -2
CCDC3Q9BQI4 AL354685.2-201ENST00000448218 1447 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC093536.2-201ENST00000565257 1406 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC3Q9BQI4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC3Q9BQI4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC138915.1-201ENST00000565427 1685 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 RNU6-82P-201ENST00000363970 107 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 SNORD14B-201ENST00000364533 90 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 Y_RNA.402-201ENST00000383972 102 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 Y_RNA.480-201ENST00000384364 102 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AL356057.2-201ENST00000403318 432 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 RNU2-3P-201ENST00000410144 191 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 Y_RNA.599-201ENST00000410489 109 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 FCF1P9-201ENST00000412546 282 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AL096701.2-201ENST00000416920 238 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 MTCYBP8-201ENST00000422855 651 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 C8orf59P1-201ENST00000429930 303 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 RN7SL499P-201ENST00000481141 276 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC007151.1-201ENST00000572774 483 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC073539.2-201ENST00000597113 165 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 RPL23AP78-201ENST00000599928 470 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 DEFB131E-202ENST00000602581 683 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AL391813.1-201ENST00000603098 260 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC012119.1-201ENST00000603184 222 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC004492.1-201ENST00000607036 742 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC022418.1-201ENST00000624118 445 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 FER-210ENST00000628534 558 ntTSL 5 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC068137.3-201ENST00000639191 341 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 AC073869.6-201ENST00000640656 341 ntBASIC2.57□□□□□ -2
CCDC3Q9BQI4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.57□□□□□ -2
CCDC3Q9BQI4 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 SNORD56.5-201ENST00000364281 72 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 RNU6-384P-201ENST00000364900 104 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 RNU6-483P-201ENST00000384088 108 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 RNU6-1179P-201ENST00000384667 107 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 MIR767-201ENST00000390228 109 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 FO393413.1-201ENST00000402892 195 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 MIR1261-201ENST00000408659 82 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 MTCO1P21-201ENST00000416634 589 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 ARL5AP1-201ENST00000418991 388 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 SNRPEP10-201ENST00000420249 274 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 EIF1P1-201ENST00000421436 341 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 RPS3AP44-201ENST00000425466 790 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC007560.1-201ENST00000426912 237 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC000111.3-201ENST00000433478 193 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.56□□□□□ -2
CCDC3Q9BQI4 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 AL583843.1-201ENST00000456070 346 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 SCARNA18-201ENST00000459004 134 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 RPL38P4-201ENST00000502376 214 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC074344.1-201ENST00000512823 224 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 RNU2-69P-201ENST00000516061 100 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 RNU6-1281P-201ENST00000516223 105 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms