Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 SNORA40.14-201ENST00000516543 86 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 RNA5SP34-201ENST00000516887 130 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AC092490.3-201ENST00000545370 572 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 VN1R91P-201ENST00000594377 169 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AC073410.2-201ENST00000603240 332 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AC016727.2-201ENST00000603988 621 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AL162730.1-201ENST00000605734 292 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AC069200.1-201ENST00000609511 323 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AL731566.2-201ENST00000618971 317 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 AL359854.1-201ENST00000614203 1594 ntBASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CLRN3Q8NCR9 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 Y_RNA.424-201ENST00000384063 103 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 Y_RNA.526-201ENST00000384572 110 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 MIR153-2-201ENST00000385225 87 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 U3.26-201ENST00000391236 204 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 RNU6-1140P-201ENST00000410517 106 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 OR4C10P-201ENST00000434991 931 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 CEACAMP7-201ENST00000444105 496 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AC112492.4-201ENST00000456549 352 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AF186996.7-201ENST00000492781 209 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 RAC1P5-201ENST00000512182 576 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 RN7SKP66-201ENST00000516681 231 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 Y_RNA.720-201ENST00000517166 92 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AC079598.5-201ENST00000547460 117 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 MIR1269B-201ENST00000580405 75 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 MIR4425-201ENST00000580572 84 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 RN7SL753P-201ENST00000581238 290 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AC008737.2-201ENST00000599446 118 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 MIR6862-1-201ENST00000613016 70 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 MIR6862-2-201ENST00000614755 70 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 IPO8P1-201ENST00000455509 3109 ntBASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.36□□□□□ -1.87
CLRN3Q8NCR9 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 MFSD8-236ENST00000641509 4050 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 RNU6-1159P-201ENST00000362933 107 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 U3.13-201ENST00000364804 214 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 RNU6-985P-201ENST00000410182 104 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 RN7SKP229-201ENST00000410465 302 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC114755.2-201ENST00000413520 361 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 MTCO3P19-201ENST00000415864 321 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AL590135.1-201ENST00000422215 156 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC019205.3-201ENST00000424573 156 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC016700.2-201ENST00000446011 156 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC012671.1-201ENST00000451912 203 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AL353752.1-201ENST00000454946 260 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 MTND5P22-201ENST00000458380 195 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 RN7SL629P-201ENST00000489622 285 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AIG1P1-201ENST00000503376 148 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 MIR2355-201ENST00000517199 87 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 TVP23BP1-201ENST00000557500 617 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC006600.1-201ENST00000572529 153 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 KLKP1-201ENST00000595979 403 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC136443.5-201ENST00000603741 370 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 SNORD58B-201ENST00000607313 66 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC087588.2-201ENST00000617667 426 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 U2.1-201ENST00000618978 145 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AL162373.1-201ENST00000620433 407 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 Z82217.1-201ENST00000625157 8149 ntBASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CLRN3Q8NCR9 AP003122.5-201ENST00000527668 3766 ntBASIC3.34□□□□□ -1.87
CLRN3Q8NCR9 Y_RNA.455-201ENST00000384230 98 ntBASIC3.34□□□□□ -1.87
CLRN3Q8NCR9 RNU6-17P-201ENST00000384245 107 ntBASIC3.34□□□□□ -1.87
CLRN3Q8NCR9 RNU6-18P-201ENST00000384527 107 ntBASIC3.34□□□□□ -1.87
CLRN3Q8NCR9 U3.30-201ENST00000391308 210 ntBASIC3.34□□□□□ -1.87
CLRN3Q8NCR9 Y_RNA.592-201ENST00000410274 109 ntBASIC3.34□□□□□ -1.87
CLRN3Q8NCR9 RNU6-101P-201ENST00000410323 104 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 152.7 ms