Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 Z82205.1-201ENST00000428456 297 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 AC113410.1-201ENST00000505029 247 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 MTCYBP40-201ENST00000509390 1135 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 SNORD79.1-201ENST00000516069 84 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 AC023050.2-201ENST00000544968 387 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 MIR4667-201ENST00000578933 66 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 AL138726.1-201ENST00000614873 333 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 AC018926.1-201ENST00000616335 435 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 RNU4-45P-201ENST00000365469 141 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 RNU6-658P-201ENST00000384606 106 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 SNORD89-201ENST00000390981 114 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 UBE2V1P2-201ENST00000397758 440 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 MTND4P20-201ENST00000424125 869 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 FAM204CP-201ENST00000424489 642 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 DNAJC19P8-201ENST00000452887 259 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 AC105758.1-201ENST00000506038 399 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 ACA59.2-201ENST00000517061 156 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 RNA5SP437-201ENST00000517249 129 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 AC027104.1-201ENST00000563702 681 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 MIR4714-201ENST00000580728 77 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 GAS5-AS1-201ENST00000602767 694 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 Z98751.3-201ENST00000604447 521 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 AL603758.1-201ENST00000618654 241 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 AC243829.3-201ENST00000622177 108 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 AC093648.1-201ENST00000623546 606 ntBASIC-0.11□□□□□ -2.43
LINC00643Q86TS7 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 RNU6-1235P-201ENST00000384559 107 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 Z92545.1-201ENST00000411782 234 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 RPL31P54-201ENST00000429803 370 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AC099677.2-201ENST00000436385 175 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AL353718.1-201ENST00000451028 517 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 CECR9-201ENST00000453421 199 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 RNU6-498P-201ENST00000459468 107 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 RNU6-965P-201ENST00000516721 96 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 RNU6-840P-201ENST00000517275 65 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AC087854.1-201ENST00000519706 414 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AC109446.2-201ENST00000567872 497 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 RAC1P9-201ENST00000604990 392 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AC092354.1-201ENST00000606057 376 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 RNU6-91P-201ENST00000607774 107 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 AC126177.8-201ENST00000618339 1015 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 MIR4275-201ENST00000636486 87 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 MIR6767-201ENST00000637302 66 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 ZNF849P-201ENST00000594711 1566 ntBASIC-0.12□□□□□ -2.43
LINC00643Q86TS7 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 U3.9-201ENST00000363823 204 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 RNU6-969P-201ENST00000383900 105 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 FTH1P15-201ENST00000406984 280 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 OOSP1P1-201ENST00000423265 274 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 ELOCP14-201ENST00000428070 331 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 ELOCP7-201ENST00000439968 331 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 MTND1P18-201ENST00000448191 573 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AL672167.3-201ENST00000465951 960 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AL163540.1-201ENST00000485382 386 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AC091435.1-201ENST00000505442 584 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AC016727.1-205ENST00000605437 569 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AC012557.2-201ENST00000605919 418 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AC012360.2-201ENST00000609349 391 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 AC120349.3-201ENST00000624377 529 ntBASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC-0.13□□□□□ -2.43
LINC00643Q86TS7 OR4G2P-201ENST00000328113 903 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 MIR378A-201ENST00000362177 66 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 RNU6-331P-201ENST00000384724 107 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 RNU6-321P-201ENST00000410912 106 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 RPL22P18-201ENST00000417197 377 ntBASIC-0.14□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms