Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 Y_RNA.623-201ENST00000411128 95 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AL592148.1-201ENST00000413568 445 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 RPL26P27-201ENST00000414397 437 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 MTND1P23-201ENST00000416931 372 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AC016831.2-201ENST00000417179 352 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.58□□□□□ -2
PDLIM3Q53GG5 RPS15AP5-201ENST00000436276 388 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AC092001.1-201ENST00000453012 261 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.58□□□□□ -2
PDLIM3Q53GG5 BTF3P15-201ENST00000455606 336 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 snoU13.26-201ENST00000459452 105 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 RN7SL75P-201ENST00000461926 281 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AC128713.1-201ENST00000471495 306 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AC069439.1-201ENST00000494739 167 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.58□□□□□ -2
PDLIM3Q53GG5 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
PDLIM3Q53GG5 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.58□□□□□ -2
PDLIM3Q53GG5 AL121821.2-201ENST00000556081 394 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 GTF3AP2-201ENST00000557014 266 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AC025281.1-201ENST00000567026 265 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AL355598.1-201ENST00000604169 202 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 U2.17-201ENST00000611454 95 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AC011890.2-201ENST00000613393 294 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 MIR3199-2-201ENST00000636243 86 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 MTND5P19-201ENST00000424872 1794 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 AC004520.1-201ENST00000608362 1413 ntBASIC2.58□□□□□ -2
PDLIM3Q53GG5 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 AL139276.1-201ENST00000311910 1001 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 RNU6-451P-201ENST00000362921 107 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 RNY3P3-201ENST00000363816 102 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 SET-203ENST00000372688 801 ntTSL 2 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 RNU6-38P-201ENST00000384085 107 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 RNU6-434P-201ENST00000384376 107 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 RNU6-332P-201ENST00000391193 108 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 Y_RNA.615-201ENST00000410769 117 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AC023141.4-201ENST00000412031 328 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 BPY2DP-201ENST00000422208 265 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 MYL8P-204ENST00000431574 518 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AL513043.1-201ENST00000439124 535 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 BRK1P2-201ENST00000442875 223 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 RNU6-333P-201ENST00000459117 107 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AC109925.1-201ENST00000478069 331 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AC008716.1-201ENST00000511084 513 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AC074344.1-201ENST00000512823 224 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AC104136.1-201ENST00000512969 394 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 RNU2-69P-201ENST00000516061 100 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 RN7SKP43-201ENST00000516173 320 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 COX6CP5-201ENST00000527162 228 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 GLYCAM1-201ENST00000546596 285 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 CYCSP39-201ENST00000565821 309 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.57□□□□□ -2
PDLIM3Q53GG5 AC092747.3-201ENST00000603769 301 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AC002044.1-201ENST00000606707 158 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 RMST_3.1-201ENST00000611651 109 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AL031601.2-202ENST00000622650 282 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 AC100810.6-201ENST00000638068 285 ntBASIC2.57□□□□□ -2
PDLIM3Q53GG5 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PDLIM3Q53GG5 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.57□□□□□ -2
PDLIM3Q53GG5 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
PDLIM3Q53GG5 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PDLIM3Q53GG5 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PDLIM3Q53GG5 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
PDLIM3Q53GG5 MIR412-201ENST00000362142 91 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 Z98749.2-208ENST00000381646 500 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 NDUFS5P4-201ENST00000412983 318 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 MRPS10P2-201ENST00000431226 381 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 RPS15AP7-201ENST00000439294 405 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 AC132942.1-201ENST00000486753 483 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 AC083904.1-201ENST00000487828 231 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 AIG1P1-201ENST00000503376 148 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 MRPS36P2-201ENST00000512569 299 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 RNU6-703P-201ENST00000516946 107 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 LINC00933-203ENST00000559812 219 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 OR1M4P-201ENST00000589199 287 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 AC005261.5-201ENST00000596280 355 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 AC068944.2-201ENST00000610373 403 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.56□□□□□ -2
PDLIM3Q53GG5 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.56□□□□□ -2
PDLIM3Q53GG5 AC135776.4-201ENST00000624300 1904 ntBASIC2.56□□□□□ -2
PDLIM3Q53GG5 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 194.3 ms