Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU5B-4P-201ENST00000363508 111 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 Y_RNA.251-201ENST00000364551 99 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-343P-201ENST00000364709 104 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 MIR518D-201ENST00000385014 87 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 DHFRP6-201ENST00000401776 268 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 OR51A5P-201ENST00000415429 942 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC097463.2-201ENST00000421074 142 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 COX7BP2-201ENST00000437976 242 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 PTGES3P1-201ENST00000439531 483 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 MTCYBP42-201ENST00000444653 1130 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 ZNF886P-201ENST00000450781 723 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 SMURF2P1-201ENST00000514992 481 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 SNORA31.3-201ENST00000516029 96 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-927P-201ENST00000516199 100 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC023632.1-201ENST00000518463 375 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 MIR4299-201ENST00000577899 72 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC174048.1-201ENST00000603389 144 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC096772.1-201ENST00000609146 564 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 BX119904.4-201ENST00000424402 301 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 GDI2P2-201ENST00000445131 608 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 DEFB130C-202ENST00000530001 230 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC104072.1-201ENST00000568817 668 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC012213.3-201ENST00000577199 777 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 BNIP3P25-201ENST00000596023 559 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AL031274.2-201ENST00000599419 203 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC098483.2-201ENST00000603158 454 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AL450336.1-201ENST00000605180 586 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC008759.3-201ENST00000613300 508 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AC104985.3-201ENST00000623479 597 ntBASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC88AQ3V6T2 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-942P-201ENST00000363002 107 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-486P-201ENST00000363116 107 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-278P-201ENST00000390945 109 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AL139397.2-201ENST00000404529 772 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 RNU2-41P-201ENST00000410991 178 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-516P-201ENST00000411381 104 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AC068533.2-201ENST00000411872 306 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 MRPS36P1-201ENST00000421291 307 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 USP9YP24-201ENST00000434374 697 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 MTND6P13-201ENST00000443510 523 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-333P-201ENST00000459117 107 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AC093809.1-201ENST00000509155 340 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 FAM206BP-201ENST00000510179 541 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AC079395.1-201ENST00000510981 262 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 RNA5SP216-201ENST00000516111 123 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 CYB5AP5-201ENST00000549779 389 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AF129408.1-201ENST00000608767 431 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 AC084824.5-201ENST00000612009 413 ntBASIC1.17□□□□□ -2.22
CCDC88AQ3V6T2 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 RNU1-58P-201ENST00000362413 163 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-622P-201ENST00000384272 103 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AL096829.2-201ENST00000446582 742 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AC107953.1-201ENST00000522216 297 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AC092451.2-201ENST00000538746 658 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AC126365.2-201ENST00000580630 379 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AC009541.1-201ENST00000438279 2662 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-288P-201ENST00000363690 104 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 Y_RNA.408-201ENST00000383987 102 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 FTH1P15-201ENST00000406984 280 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 RNU2-48P-201ENST00000410694 191 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AC009310.1-201ENST00000414414 451 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AL139421.1-201ENST00000423010 169 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 GTF2IP3-201ENST00000433887 494 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 MTCO2P25-201ENST00000447065 681 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AC114801.2-201ENST00000503825 781 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms