Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SNORA70.2-201ENST00000364506 135 ntBASIC3.96□□□□□ -1.78
RNF4P78317 MIR93-201ENST00000385024 80 ntBASIC3.96□□□□□ -1.78
RNF4P78317 SNORD66.1-201ENST00000391230 76 ntBASIC3.96□□□□□ -1.78
RNF4P78317 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.96□□□□□ -1.78
RNF4P78317 EIF1AXP1-201ENST00000419267 435 ntBASIC3.96□□□□□ -1.78
RNF4P78317 AP000907.1-201ENST00000428428 510 ntBASIC3.96□□□□□ -1.78
RNF4P78317 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.96□□□□□ -1.78
RNF4P78317 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.96□□□□□ -1.78
RNF4P78317 PRELID3BP1-201ENST00000457142 540 ntBASIC3.96□□□□□ -1.78
RNF4P78317 RN7SL817P-201ENST00000480777 288 ntBASIC3.96□□□□□ -1.78
RNF4P78317 RNA5SP468-201ENST00000516782 93 ntBASIC3.96□□□□□ -1.78
RNF4P78317 RNU6-928P-201ENST00000516876 104 ntBASIC3.96□□□□□ -1.78
RNF4P78317 CYCSP29-201ENST00000533731 318 ntBASIC3.96□□□□□ -1.78
RNF4P78317 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.96□□□□□ -1.78
RNF4P78317 AC006064.5-201ENST00000541782 248 ntBASIC3.96□□□□□ -1.78
RNF4P78317 PARP1P2-201ENST00000556806 195 ntBASIC3.96□□□□□ -1.78
RNF4P78317 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.96□□□□□ -1.78
RNF4P78317 AL590392.1-201ENST00000604960 446 ntBASIC3.96□□□□□ -1.78
RNF4P78317 RMST_6.1-201ENST00000611980 203 ntBASIC3.96□□□□□ -1.78
RNF4P78317 AC024581.2-201ENST00000619986 252 ntBASIC3.96□□□□□ -1.78
RNF4P78317 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.96□□□□□ -1.78
RNF4P78317 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
RNF4P78317 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
RNF4P78317 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.96□□□□□ -1.78
RNF4P78317 AC027290.2-201ENST00000623210 18662 ntBASIC3.96□□□□□ -1.78
RNF4P78317 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
RNF4P78317 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
RNF4P78317 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
RNF4P78317 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
RNF4P78317 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
RNF4P78317 SNORA31-201ENST00000362607 130 ntBASIC3.95□□□□□ -1.78
RNF4P78317 RNA5SP361-201ENST00000362686 118 ntBASIC3.95□□□□□ -1.78
RNF4P78317 Y_RNA.274-201ENST00000364714 101 ntBASIC3.95□□□□□ -1.78
RNF4P78317 SNORD32A-201ENST00000364805 84 ntBASIC3.95□□□□□ -1.78
RNF4P78317 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.95□□□□□ -1.78
RNF4P78317 SNORA29-201ENST00000384183 140 ntBASIC3.95□□□□□ -1.78
RNF4P78317 RNU6-318P-201ENST00000384283 103 ntBASIC3.95□□□□□ -1.78
RNF4P78317 RNA5SP39-201ENST00000411245 120 ntBASIC3.95□□□□□ -1.78
RNF4P78317 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.95□□□□□ -1.78
RNF4P78317 AL445305.1-201ENST00000432577 575 ntBASIC3.95□□□□□ -1.78
RNF4P78317 AC091390.1-201ENST00000433904 331 ntBASIC3.95□□□□□ -1.78
RNF4P78317 AC007389.2-201ENST00000434630 306 ntBASIC3.95□□□□□ -1.78
RNF4P78317 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.95□□□□□ -1.78
RNF4P78317 ABCF2P2-201ENST00000450549 296 ntBASIC3.95□□□□□ -1.78
RNF4P78317 AP003730.1-201ENST00000524605 285 ntBASIC3.95□□□□□ -1.78
RNF4P78317 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.95□□□□□ -1.78
RNF4P78317 RRN3P3-201ENST00000549207 578 ntBASIC3.95□□□□□ -1.78
RNF4P78317 MIR3690-201ENST00000580266 75 ntBASIC3.95□□□□□ -1.78
RNF4P78317 MIR4697-201ENST00000582977 78 ntBASIC3.95□□□□□ -1.78
RNF4P78317 AC012468.1-201ENST00000604888 430 ntBASIC3.95□□□□□ -1.78
RNF4P78317 MIR6134-201ENST00000617606 109 ntBASIC3.95□□□□□ -1.78
RNF4P78317 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
RNF4P78317 SNORA43.4-201ENST00000629559 138 ntBASIC3.95□□□□□ -1.78
RNF4P78317 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.95□□□□□ -1.78
RNF4P78317 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
RNF4P78317 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.95□□□□□ -1.78
RNF4P78317 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
RNF4P78317 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
RNF4P78317 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
RNF4P78317 AC010733.2-201ENST00000589496 5702 ntBASIC3.95□□□□□ -1.78
RNF4P78317 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
RNF4P78317 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
RNF4P78317 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
RNF4P78317 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.94□□□□□ -1.78
RNF4P78317 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
RNF4P78317 RNU6-280P-201ENST00000364145 104 ntBASIC3.94□□□□□ -1.78
RNF4P78317 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
RNF4P78317 RNU6-1062P-201ENST00000383908 107 ntBASIC3.94□□□□□ -1.78
RNF4P78317 Y_RNA.504-201ENST00000384481 104 ntBASIC3.94□□□□□ -1.78
RNF4P78317 MIR487A-201ENST00000385009 80 ntBASIC3.94□□□□□ -1.78
RNF4P78317 MIR153-2-201ENST00000385225 87 ntBASIC3.94□□□□□ -1.78
RNF4P78317 FTH1P15-201ENST00000406984 280 ntBASIC3.94□□□□□ -1.78
RNF4P78317 RPS15AP7-201ENST00000439294 405 ntBASIC3.94□□□□□ -1.78
RNF4P78317 AC125238.1-201ENST00000448842 249 ntBASIC3.94□□□□□ -1.78
RNF4P78317 SSXP4-201ENST00000451349 245 ntBASIC3.94□□□□□ -1.78
RNF4P78317 MRPL42P6-201ENST00000486397 371 ntBASIC3.94□□□□□ -1.78
RNF4P78317 RPS27AP10-201ENST00000496103 208 ntBASIC3.94□□□□□ -1.78
RNF4P78317 AC023141.12-201ENST00000512399 199 ntBASIC3.94□□□□□ -1.78
RNF4P78317 SNORA31.9-201ENST00000516429 84 ntBASIC3.94□□□□□ -1.78
RNF4P78317 RNU5B-3P-201ENST00000516601 115 ntBASIC3.94□□□□□ -1.78
RNF4P78317 SNORA81.3-201ENST00000517283 198 ntBASIC3.94□□□□□ -1.78
RNF4P78317 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.94□□□□□ -1.78
RNF4P78317 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
RNF4P78317 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.94□□□□□ -1.78
RNF4P78317 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.94□□□□□ -1.78
RNF4P78317 AC136624.4-201ENST00000573044 370 ntBASIC3.94□□□□□ -1.78
RNF4P78317 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.94□□□□□ -1.78
RNF4P78317 AC019159.1-201ENST00000605094 187 ntBASIC3.94□□□□□ -1.78
RNF4P78317 AC023043.4-201ENST00000612081 449 ntBASIC3.94□□□□□ -1.78
RNF4P78317 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
RNF4P78317 AC091903.1-201ENST00000624322 454 ntBASIC3.94□□□□□ -1.78
RNF4P78317 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
RNF4P78317 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.93□□□□□ -1.78
RNF4P78317 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 AL079305.1-201ENST00000623159 3008 ntBASIC3.93□□□□□ -1.78
RNF4P78317 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RNF4P78317 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 150.7 ms