Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.28□□□□□ -1.73
LIG3P49916 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
LIG3P49916 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
LIG3P49916 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIG3P49916 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIG3P49916 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
LIG3P49916 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIG3P49916 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
LIG3P49916 RLIMP1-201ENST00000339626 1680 ntBASIC4.27□□□□□ -1.73
LIG3P49916 RNU1-18P-201ENST00000363062 164 ntBASIC4.27□□□□□ -1.73
LIG3P49916 SNORA70C-201ENST00000384538 135 ntBASIC4.27□□□□□ -1.73
LIG3P49916 SNORD66.1-201ENST00000391230 76 ntBASIC4.27□□□□□ -1.73
LIG3P49916 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIG3P49916 RNU6-130P-201ENST00000411112 103 ntBASIC4.27□□□□□ -1.73
LIG3P49916 NDUFS5P4-201ENST00000412983 318 ntBASIC4.27□□□□□ -1.73
LIG3P49916 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.27□□□□□ -1.73
LIG3P49916 SDAD1P3-201ENST00000427380 333 ntBASIC4.27□□□□□ -1.73
LIG3P49916 RPL21P40-201ENST00000428586 483 ntBASIC4.27□□□□□ -1.73
LIG3P49916 FTH1P6-201ENST00000430768 320 ntBASIC4.27□□□□□ -1.73
LIG3P49916 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIG3P49916 snoU13.30-201ENST00000458951 104 ntBASIC4.27□□□□□ -1.73
LIG3P49916 RPL39P38-201ENST00000467018 153 ntBASIC4.27□□□□□ -1.73
LIG3P49916 AC084357.1-201ENST00000473404 255 ntBASIC4.27□□□□□ -1.73
LIG3P49916 IGHVII-53-1-201ENST00000519538 255 ntBASIC4.27□□□□□ -1.73
LIG3P49916 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.27□□□□□ -1.73
LIG3P49916 AC025884.1-201ENST00000556034 378 ntBASIC4.27□□□□□ -1.73
LIG3P49916 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
LIG3P49916 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.27□□□□□ -1.73
LIG3P49916 AC096772.1-201ENST00000609146 564 ntBASIC4.27□□□□□ -1.73
LIG3P49916 AC023043.4-201ENST00000612081 449 ntBASIC4.27□□□□□ -1.73
LIG3P49916 MIR6134-201ENST00000617606 109 ntBASIC4.27□□□□□ -1.73
LIG3P49916 AC024581.2-201ENST00000619986 252 ntBASIC4.27□□□□□ -1.73
LIG3P49916 MIR8059-201ENST00000620427 81 ntBASIC4.27□□□□□ -1.73
LIG3P49916 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.27□□□□□ -1.73
LIG3P49916 SCARNA4-201ENST00000629045 128 ntBASIC4.27□□□□□ -1.73
LIG3P49916 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIG3P49916 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LIG3P49916 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIG3P49916 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.26□□□□□ -1.73
LIG3P49916 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.26□□□□□ -1.73
LIG3P49916 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIG3P49916 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIG3P49916 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIG3P49916 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
LIG3P49916 Y_RNA.458-201ENST00000384240 102 ntBASIC4.26□□□□□ -1.73
LIG3P49916 RNY3P4-201ENST00000384428 101 ntBASIC4.26□□□□□ -1.73
LIG3P49916 RNU6-1035P-201ENST00000384477 107 ntBASIC4.26□□□□□ -1.73
LIG3P49916 Y_RNA.518-201ENST00000384552 113 ntBASIC4.26□□□□□ -1.73
LIG3P49916 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.26□□□□□ -1.73
LIG3P49916 RNA5SP239-201ENST00000410218 129 ntBASIC4.26□□□□□ -1.73
LIG3P49916 RNA5SP44-201ENST00000410446 133 ntBASIC4.26□□□□□ -1.73
LIG3P49916 EIF1AXP1-201ENST00000419267 435 ntBASIC4.26□□□□□ -1.73
LIG3P49916 RPL23AP22-201ENST00000437556 453 ntBASIC4.26□□□□□ -1.73
LIG3P49916 TOMM22P6-201ENST00000465035 409 ntBASIC4.26□□□□□ -1.73
LIG3P49916 AF213884.1-201ENST00000488102 463 ntBASIC4.26□□□□□ -1.73
LIG3P49916 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIG3P49916 RNU6-1023P-201ENST00000516137 106 ntBASIC4.26□□□□□ -1.73
LIG3P49916 Y_RNA.680-201ENST00000516441 93 ntBASIC4.26□□□□□ -1.73
LIG3P49916 AC006064.5-201ENST00000541782 248 ntBASIC4.26□□□□□ -1.73
LIG3P49916 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.26□□□□□ -1.73
LIG3P49916 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.26□□□□□ -1.73
LIG3P49916 MIR4644-201ENST00000579929 84 ntBASIC4.26□□□□□ -1.73
LIG3P49916 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
LIG3P49916 U7.8-201ENST00000619968 63 ntBASIC4.26□□□□□ -1.73
LIG3P49916 U6.92-201ENST00000636464 89 ntBASIC4.26□□□□□ -1.73
LIG3P49916 AC106871.1-201ENST00000568324 3102 ntBASIC4.26□□□□□ -1.73
LIG3P49916 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIG3P49916 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.26□□□□□ -1.73
LIG3P49916 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIG3P49916 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.26□□□□□ -1.73
LIG3P49916 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
LIG3P49916 AL672296.1-201ENST00000427780 2158 ntBASIC4.26□□□□□ -1.73
LIG3P49916 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIG3P49916 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIG3P49916 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.25□□□□□ -1.73
LIG3P49916 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
LIG3P49916 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
LIG3P49916 RNU6-212P-201ENST00000362642 104 ntBASIC4.25□□□□□ -1.73
LIG3P49916 RN7SKP280-201ENST00000364196 304 ntBASIC4.25□□□□□ -1.73
LIG3P49916 RNU1-100P-201ENST00000365255 165 ntBASIC4.25□□□□□ -1.73
LIG3P49916 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
LIG3P49916 SNORD116-20-201ENST00000384529 92 ntBASIC4.25□□□□□ -1.73
LIG3P49916 Y_RNA.562-201ENST00000384695 113 ntBASIC4.25□□□□□ -1.73
LIG3P49916 RPS26P8-201ENST00000393490 348 ntBASIC4.25□□□□□ -1.73
LIG3P49916 RPL21P17-201ENST00000397467 475 ntBASIC4.25□□□□□ -1.73
LIG3P49916 RAB9AP3-201ENST00000412737 573 ntBASIC4.25□□□□□ -1.73
LIG3P49916 AC004975.1-201ENST00000428733 208 ntBASIC4.25□□□□□ -1.73
LIG3P49916 COX6B1P7-201ENST00000430845 235 ntBASIC4.25□□□□□ -1.73
LIG3P49916 AC091286.1-201ENST00000431233 461 ntBASIC4.25□□□□□ -1.73
LIG3P49916 Z82188.1-201ENST00000436709 154 ntBASIC4.25□□□□□ -1.73
LIG3P49916 CYCSP32-201ENST00000440548 321 ntBASIC4.25□□□□□ -1.73
LIG3P49916 AC243964.1-201ENST00000441814 261 ntBASIC4.25□□□□□ -1.73
LIG3P49916 RAB9AP1-201ENST00000449393 573 ntBASIC4.25□□□□□ -1.73
LIG3P49916 AL353705.4-201ENST00000449661 238 ntBASIC4.25□□□□□ -1.73
LIG3P49916 RN7SL93P-201ENST00000463035 293 ntBASIC4.25□□□□□ -1.73
LIG3P49916 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LIG3P49916 RPL31P61-201ENST00000496160 376 ntBASIC4.25□□□□□ -1.73
LIG3P49916 MRPS36P4-201ENST00000534436 298 ntBASIC4.25□□□□□ -1.73
LIG3P49916 AP002770.2-201ENST00000543613 532 ntBASIC4.25□□□□□ -1.73
LIG3P49916 AC011602.1-201ENST00000546484 331 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms