Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.61□□□□□ -2.31
ABCA1O95477 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
ABCA1O95477 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.61□□□□□ -2.31
ABCA1O95477 RNU5E-1-201ENST00000362477 120 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 Y_RNA.25-201ENST00000362528 102 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 RNU6-1066P-201ENST00000363573 105 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 RNU6-637P-201ENST00000384050 107 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 RNU6-432P-201ENST00000384196 109 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 SNORD14D-201ENST00000384390 87 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 BTF3P8-201ENST00000414577 526 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 MTATP6P27-201ENST00000416987 621 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 MTCO1P44-201ENST00000441935 243 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
ABCA1O95477 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.61□□□□□ -2.31
ABCA1O95477 AC010409.1-201ENST00000487382 476 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 CYCSP23-201ENST00000519781 313 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.61□□□□□ -2.31
ABCA1O95477 AC079598.5-201ENST00000547460 117 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 AC096720.1-201ENST00000604441 183 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 PRR13P7-201ENST00000605538 430 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 AL355802.3-201ENST00000607571 545 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 AL603758.1-201ENST00000618654 241 ntBASIC0.61□□□□□ -2.31
ABCA1O95477 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.61□□□□□ -2.31
ABCA1O95477 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
ABCA1O95477 RNU6-778P-201ENST00000363269 103 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 Y_RNA.280-201ENST00000364765 112 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC0.6□□□□□ -2.31
ABCA1O95477 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.6□□□□□ -2.31
ABCA1O95477 CST2P1-201ENST00000425770 87 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.6□□□□□ -2.31
ABCA1O95477 AC010460.2-201ENST00000509054 677 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 AC067942.3-201ENST00000512025 362 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.6□□□□□ -2.31
ABCA1O95477 AP003072.2-201ENST00000527756 676 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.6□□□□□ -2.31
ABCA1O95477 AC093249.1-201ENST00000567049 203 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 MIR4666A-201ENST00000580160 79 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 AL109620.1-201ENST00000618738 1197 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 AC006213.5-201ENST00000619673 288 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.6□□□□□ -2.31
ABCA1O95477 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.6□□□□□ -2.31
ABCA1O95477 AC091925.1-201ENST00000623204 462 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 AC092192.1-201ENST00000633154 1018 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
ABCA1O95477 MTND4P12-201ENST00000498999 1377 ntBASIC0.6□□□□□ -2.31
ABCA1O95477 MIR218-1-201ENST00000384999 110 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 DNAJA1P2-201ENST00000421360 1197 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 C1DP1-201ENST00000426049 402 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC0.59□□□□□ -2.31
ABCA1O95477 GTF2IP13-201ENST00000438487 386 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.59□□□□□ -2.31
ABCA1O95477 MTND5P8-201ENST00000449817 1083 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.59□□□□□ -2.31
ABCA1O95477 CYP2C59P-201ENST00000457790 269 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 RPL7P43-201ENST00000478876 753 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 RPL21P47-201ENST00000483696 477 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
ABCA1O95477 AC093677.1-201ENST00000514414 678 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.59□□□□□ -2.31
ABCA1O95477 COPS8P3-201ENST00000526024 482 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.59□□□□□ -2.31
ABCA1O95477 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.59□□□□□ -2.31
ABCA1O95477 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.59□□□□□ -2.31
ABCA1O95477 U1.36-201ENST00000620684 176 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 AL121890.5-201ENST00000620848 304 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 AC002550.2-201ENST00000621246 394 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.59□□□□□ -2.31
ABCA1O95477 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.59□□□□□ -2.31
ABCA1O95477 AL590396.4-201ENST00000636779 956 ntBASIC0.59□□□□□ -2.31
ABCA1O95477 RNU6-223P-201ENST00000362830 107 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 Y_RNA.67-201ENST00000362870 100 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 RNU1-124P-201ENST00000363861 145 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 SNORA25B-201ENST00000365507 128 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 SNORA22-201ENST00000383907 134 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 SNORA22C-201ENST00000384614 134 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 MIR518D-201ENST00000385014 87 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.59□□□□□ -2.32
ABCA1O95477 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.59□□□□□ -2.32
ABCA1O95477 AC108729.1-201ENST00000487812 947 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 MTCO3P42-201ENST00000509488 518 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 MTCO3P39-201ENST00000514812 518 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 MRPS36P5-201ENST00000551909 298 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 AL132857.1-201ENST00000555180 708 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 AP002906.1-201ENST00000603405 233 ntBASIC0.59□□□□□ -2.32
ABCA1O95477 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.59□□□□□ -2.32
ABCA1O95477 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.59□□□□□ -2.32
ABCA1O95477 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.58□□□□□ -2.32
ABCA1O95477 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.58□□□□□ -2.32
ABCA1O95477 RNU2-36P-201ENST00000410361 191 ntBASIC0.58□□□□□ -2.32
ABCA1O95477 MRPL35P3-201ENST00000421557 364 ntBASIC0.58□□□□□ -2.32
ABCA1O95477 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.58□□□□□ -2.32
ABCA1O95477 BRK1P2-201ENST00000442875 223 ntBASIC0.58□□□□□ -2.32
ABCA1O95477 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.58□□□□□ -2.32
ABCA1O95477 ACA59.2-201ENST00000517061 156 ntBASIC0.58□□□□□ -2.32
ABCA1O95477 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.58□□□□□ -2.32
ABCA1O95477 MIR338-201ENST00000636369 67 ntBASIC0.58□□□□□ -2.32
ABCA1O95477 MIR6759-201ENST00000638110 65 ntBASIC0.58□□□□□ -2.32
ABCA1O95477 RNA5SP347-201ENST00000362445 119 ntBASIC0.58□□□□□ -2.32
ABCA1O95477 RNU6-839P-201ENST00000363347 108 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms