Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AC093875.1-201ENST00000623688 504 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AC007490.1-201ENST00000624321 703 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AL133216.2-202ENST00000634512 349 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 FARSBP1-201ENST00000435808 1778 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 RNU6-942P-201ENST00000363002 107 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 RNU6-1167P-201ENST00000363227 94 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 RNU6-575P-201ENST00000411326 105 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 BTF3P8-201ENST00000414577 526 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 OR51A5P-201ENST00000415429 942 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 UBE2FP1-201ENST00000416536 447 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 SEPT7P5-201ENST00000434048 306 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 HMGB1P36-201ENST00000487709 576 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 CBX3P8-201ENST00000532412 525 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 CYP2C61P-201ENST00000604072 290 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC022709.1-201ENST00000615967 87 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 MIR6779-201ENST00000617283 64 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 PCMTD1P7-201ENST00000634506 357 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 Y_RNA.408-201ENST00000383987 102 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 RNA5SP212-201ENST00000391223 107 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 SNRPEP10-201ENST00000420249 274 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 RPS27P16-201ENST00000425758 201 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 MEMO1P3-201ENST00000459811 302 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC021382.1-201ENST00000483523 359 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 RN7SKP265-201ENST00000516448 223 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC005832.3-201ENST00000537929 631 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC012213.3-201ENST00000577199 777 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC138627.2-201ENST00000624202 601 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 AC092192.1-201ENST00000633154 1018 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.94□□□□□ -2.26
SCN3AQ9NY46 RNU5B-1-201ENST00000363286 116 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-792P-201ENST00000363490 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 SNORD14B-201ENST00000364533 90 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-1-201ENST00000383898 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-42P-201ENST00000384165 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-36P-201ENST00000384172 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-4P-201ENST00000384205 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-5P-201ENST00000384238 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-3P-201ENST00000384314 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-2-201ENST00000384627 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-9-201ENST00000384776 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-33P-201ENST00000384793 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 OR6C66P-201ENST00000414917 930 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC0.93□□□□□ -2.26
SCN3AQ9NY46 GDI2P2-201ENST00000445131 608 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AC093809.1-201ENST00000509155 340 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNA5SP216-201ENST00000516111 123 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-970P-201ENST00000516312 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-572P-201ENST00000516724 80 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.93□□□□□ -2.26
SCN3AQ9NY46 TRAV32-201ENST00000553993 340 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 MIR4285-201ENST00000581001 85 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 MIR151B-201ENST00000584249 96 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AC136443.5-201ENST00000603741 370 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AL358072.1-201ENST00000604156 575 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AC021646.1-201ENST00000605469 484 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-6P-201ENST00000606623 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AC090970.3-201ENST00000612566 866 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AC008759.3-201ENST00000613300 508 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNU6-858P-201ENST00000362436 107 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 snoZ40.1-201ENST00000364540 72 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 MIR218-1-201ENST00000384999 110 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RPL30P13-201ENST00000418873 348 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 MTND5P14-201ENST00000441481 1267 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 RNY4P37-201ENST00000516225 96 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 CYCSP27-201ENST00000527643 293 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AC243960.4-201ENST00000600532 288 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.93□□□□□ -2.26
SCN3AQ9NY46 AL109620.1-201ENST00000618738 1197 ntBASIC0.93□□□□□ -2.26
SCN3AQ9NY46 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 SNORD114-26-201ENST00000363543 72 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 RNU1-93P-201ENST00000364704 169 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 RNU6-701P-201ENST00000384059 107 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 SNORD14D-201ENST00000384390 87 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 RNU6-342P-201ENST00000384521 104 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AL139397.2-201ENST00000404529 772 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC0.92□□□□□ -2.26
SCN3AQ9NY46 RNU2-48P-201ENST00000410694 191 ntBASIC0.92□□□□□ -2.26
SCN3AQ9NY46 AC138623.1-201ENST00000418060 216 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms