Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNU6-1280P-201ENST00000365211 107 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 MIR578-201ENST00000384828 96 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 MIR524-201ENST00000385242 87 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC016831.2-201ENST00000417179 352 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 MTCO3P30-201ENST00000426425 670 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 MTCO3P5-201ENST00000433620 714 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 RPS15AP9-201ENST00000439856 381 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AL360271.2-201ENST00000447710 161 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 AL162395.1-201ENST00000457882 422 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 RPS29P15-201ENST00000458329 171 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AP001324.2-201ENST00000461163 319 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC104806.1-201ENST00000508720 308 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 RNU6-445P-201ENST00000516949 107 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 RNU6-685P-201ENST00000517088 95 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 MTCO2P4-201ENST00000517968 247 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 AP000889.2-201ENST00000532684 490 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 LINC00933-203ENST00000559812 219 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AL391840.1-201ENST00000571144 367 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AP005136.1-201ENST00000579765 429 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 MIR3199-1-201ENST00000582434 88 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC008121.1-201ENST00000603244 268 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC073648.5-201ENST00000603502 305 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 RN7SKP299-201ENST00000606679 301 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 HMGB1P24-202ENST00000615653 685 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.07□□□□□ -2.08
SKA3Q8IX90 AC080128.1-201ENST00000474389 1917 ntBASIC2.07□□□□□ -2.08
SKA3Q8IX90 SNORD115-7-201ENST00000365306 82 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 RNU1-51P-201ENST00000365345 176 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SKA3Q8IX90 RNU6-116P-201ENST00000384042 109 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 RNU4-52P-201ENST00000384209 138 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 RNU6-748P-201ENST00000384648 107 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 RNU6-1179P-201ENST00000384667 107 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 SNORA67.4-201ENST00000384688 142 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 MIR10A-201ENST00000385043 110 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 MIR454-201ENST00000390180 115 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 RNU6-550P-201ENST00000391057 101 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.06□□□□□ -2.08
SKA3Q8IX90 AL365338.1-201ENST00000422282 858 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC000111.3-201ENST00000433478 193 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC090255.1-201ENST00000495779 349 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC116655.1-201ENST00000508324 901 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 SNORA31.18-201ENST00000517043 134 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 RNA5SP503-201ENST00000517047 117 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 ACA59.2-201ENST00000517061 156 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.06□□□□□ -2.08
SKA3Q8IX90 AP002963.1-201ENST00000530590 184 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC009127.3-201ENST00000570531 403 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 SNORD53-201ENST00000579969 78 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 PIGPP4-201ENST00000584447 307 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 RPS15AP11-201ENST00000594193 385 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 AL356280.1-201ENST00000603614 379 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC103810.6-201ENST00000606708 136 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC091834.1-201ENST00000614543 472 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 AC009509.4-201ENST00000619202 509 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 HSPA8P4-201ENST00000511877 1920 ntBASIC2.06□□□□□ -2.08
SKA3Q8IX90 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
SKA3Q8IX90 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.06□□□□□ -2.08
SKA3Q8IX90 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SKA3Q8IX90 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SKA3Q8IX90 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 RNA5SP289-201ENST00000362332 137 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 RNU6-1287P-201ENST00000362914 107 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 RNU6-1060P-201ENST00000384664 107 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 RNU2-9P-201ENST00000410194 145 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 HMGB3P2-201ENST00000411913 584 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 OR6C66P-201ENST00000414917 930 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 CDK8P2-201ENST00000415020 547 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 MTCYBP5-201ENST00000423752 1135 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 CALM2P2-201ENST00000428512 440 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 MTCO2P11-201ENST00000431069 680 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 AL627311.1-201ENST00000431514 115 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 Z98742.2-201ENST00000431564 187 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 MTATP6P26-201ENST00000445926 662 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 Z83846.1-201ENST00000446798 265 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.05□□□□□ -2.08
SKA3Q8IX90 AC022364.2-201ENST00000457963 554 ntBASIC2.05□□□□□ -2.08
SKA3Q8IX90 RNU7-182P-201ENST00000459009 62 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 231.5 ms