Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AP005229.2-201ENST00000609980 697 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 MIR6718-201ENST00000616153 80 ntBASIC0.36□□□□□ -2.35
USF3Q68DE3 SNORA51.6-201ENST00000384151 125 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 RNU2-7P-201ENST00000410794 178 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 USP9YP26-201ENST00000421008 661 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 AL160275.3-201ENST00000423876 471 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 USP9YP18-201ENST00000425912 695 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC0.35□□□□□ -2.35
USF3Q68DE3 AL512844.2-201ENST00000433990 593 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.35□□□□□ -2.35
USF3Q68DE3 AL161788.1-201ENST00000441805 169 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 MTCO1P44-201ENST00000441935 243 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 USP9YP17-201ENST00000444617 696 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 HMGN2P9-201ENST00000476875 229 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.35□□□□□ -2.35
USF3Q68DE3 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC0.35□□□□□ -2.35
USF3Q68DE3 SCARNA16.2-201ENST00000516520 172 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 LSM6P2-201ENST00000552208 177 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.35□□□□□ -2.35
USF3Q68DE3 AC004817.2-201ENST00000561794 651 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 MIR3937-201ENST00000580135 106 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 AL671309.1-201ENST00000603750 544 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.35□□□□□ -2.35
USF3Q68DE3 UBE2Q2P6-201ENST00000612666 153 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 AP003400.6-201ENST00000624698 740 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 U6.107-201ENST00000637108 79 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 MIR6086-201ENST00000638065 55 ntBASIC0.35□□□□□ -2.35
USF3Q68DE3 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC0.35□□□□□ -2.35
USF3Q68DE3 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
USF3Q68DE3 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
USF3Q68DE3 RNU6-271P-201ENST00000363858 105 ntBASIC0.34□□□□□ -2.35
USF3Q68DE3 Y_RNA.390-201ENST00000383932 102 ntBASIC0.34□□□□□ -2.35
USF3Q68DE3 RNU1-119P-201ENST00000391122 165 ntBASIC0.34□□□□□ -2.35
USF3Q68DE3 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC0.34□□□□□ -2.35
USF3Q68DE3 AC124293.1-201ENST00000530034 493 ntBASIC0.34□□□□□ -2.35
USF3Q68DE3 AC006518.2-201ENST00000542513 940 ntBASIC0.34□□□□□ -2.35
USF3Q68DE3 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.34□□□□□ -2.35
USF3Q68DE3 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC0.34□□□□□ -2.35
USF3Q68DE3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.34□□□□□ -2.35
USF3Q68DE3 ROCK1P1-201ENST00000573767 549 ntBASIC0.34□□□□□ -2.35
USF3Q68DE3 RNU6-91P-201ENST00000607774 107 ntBASIC0.34□□□□□ -2.35
USF3Q68DE3 MTCO1P23-201ENST00000415223 1526 ntBASIC0.34□□□□□ -2.35
USF3Q68DE3 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
USF3Q68DE3 ENSAP3-201ENST00000312710 333 ntBASIC0.34□□□□□ -2.36
USF3Q68DE3 RNU6-673P-201ENST00000365084 104 ntBASIC0.34□□□□□ -2.36
USF3Q68DE3 RNU6-140P-201ENST00000384566 108 ntBASIC0.34□□□□□ -2.36
USF3Q68DE3 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC0.34□□□□□ -2.36
USF3Q68DE3 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.34□□□□□ -2.36
USF3Q68DE3 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.34□□□□□ -2.36
USF3Q68DE3 AP006587.4-201ENST00000526053 529 ntBASIC0.34□□□□□ -2.36
USF3Q68DE3 AC019288.1-201ENST00000557918 224 ntBASIC0.34□□□□□ -2.36
USF3Q68DE3 AC021739.1-201ENST00000559631 174 ntBASIC0.34□□□□□ -2.36
USF3Q68DE3 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.34□□□□□ -2.36
USF3Q68DE3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.34□□□□□ -2.36
USF3Q68DE3 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC0.34□□□□□ -2.36
USF3Q68DE3 BNIP3P16-201ENST00000589779 534 ntBASIC0.34□□□□□ -2.36
USF3Q68DE3 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC0.34□□□□□ -2.36
USF3Q68DE3 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.34□□□□□ -2.36
USF3Q68DE3 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.34□□□□□ -2.36
USF3Q68DE3 AC079416.3-201ENST00000624479 549 ntBASIC0.34□□□□□ -2.36
USF3Q68DE3 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.34□□□□□ -2.36
USF3Q68DE3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.34□□□□□ -2.36
USF3Q68DE3 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
USF3Q68DE3 MIR329-2-201ENST00000385029 84 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AL031577.2-201ENST00000404133 280 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 UBE2V1P4-201ENST00000425374 344 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.33□□□□□ -2.36
USF3Q68DE3 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.33□□□□□ -2.36
USF3Q68DE3 AL592447.1-201ENST00000447592 540 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
USF3Q68DE3 MEMO1P3-201ENST00000459811 302 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 COX7A2P2-201ENST00000505291 250 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.33□□□□□ -2.36
USF3Q68DE3 RNU4-57P-201ENST00000515980 135 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 HIGD1AP6-201ENST00000521833 279 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 HMGN1P30-201ENST00000589286 268 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AC018618.2-201ENST00000604770 446 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 MIR8065-201ENST00000620577 100 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AC007490.1-201ENST00000624321 703 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AL590396.2-201ENST00000636511 1041 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.33□□□□□ -2.36
USF3Q68DE3 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 RNU6-414P-201ENST00000363705 104 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 RNU6-418P-201ENST00000384035 107 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 RNU6-152P-201ENST00000384037 107 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 SNORD14D-201ENST00000384390 87 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AL121978.1-201ENST00000402778 359 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 RNU2-33P-201ENST00000410344 192 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 PIGFP2-201ENST00000421400 651 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.33□□□□□ -2.36
USF3Q68DE3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.33□□□□□ -2.36
USF3Q68DE3 AC112492.4-201ENST00000456549 352 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AC108729.1-201ENST00000487812 947 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AP003122.4-201ENST00000530980 758 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 RAB11AP2-201ENST00000545905 639 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 AC004492.1-201ENST00000607036 742 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 uc_338.15-201ENST00000615470 191 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 ZNF663P-202ENST00000641770 1131 ntBASIC0.33□□□□□ -2.36
USF3Q68DE3 GDI2P1-201ENST00000429312 1336 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms