| HES3 | Q5TGS1 | RNU6-288P-201 | ENST00000363690 | 104 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | SNORA25B-201 | ENST00000365507 | 128 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RPL21P1-201 | ENST00000399532 | 476 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LINC01065-201 | ENST00000417989 | 577 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL158823.1-201 | ENST00000418441 | 478 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LINC01509-202 | ENST00000423523 | 408 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC003084.1-201 | ENST00000427030 | 435 nt | TSL 5 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC244035.3-201 | ENST00000428399 | 271 nt | TSL 2 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL139397.1-201 | ENST00000430456 | 644 nt | TSL 2 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LINC00189-202 | ENST00000431661 | 308 nt | TSL 5 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | BBIP1-206 | ENST00000447005 | 727 nt | APPRIS P1 TSL 2 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL157882.1-201 | ENST00000447148 | 429 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LINC01564-201 | ENST00000448327 | 566 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC013269.3-201 | ENST00000450486 | 444 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC099566.1-212 | ENST00000451675 | 799 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | KATNBL1P6-201 | ENST00000453433 | 915 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC112771.1-201 | ENST00000463581 | 102 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL121594.1-201 | ENST00000475906 | 575 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC104982.1-201 | ENST00000478775 | 574 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC018541.1-202 | ENST00000518687 | 584 nt | TSL 4 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC034114.1-201 | ENST00000520293 | 285 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LINC00944-203 | ENST00000542248 | 548 nt | TSL 4 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC133480.1-201 | ENST00000547563 | 381 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC079411.1-201 | ENST00000565441 | 795 nt | TSL 1 (best) BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL391001.1-201 | ENST00000602747 | 715 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL078605.1-201 | ENST00000603529 | 500 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL713866.2-201 | ENST00000603579 | 219 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL592221.1-201 | ENST00000605266 | 382 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL773524.1-201 | ENST00000614065 | 229 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | DLEU2_6.2-201 | ENST00000620994 | 136 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | FRG1KP-201 | ENST00000623592 | 341 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC091965.5-201 | ENST00000624785 | 342 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | TMEM161B-210 | ENST00000511218 | 1351 nt | TSL 2 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LIPJ-201 | ENST00000371939 | 1484 nt | APPRIS P1 TSL 1 (best) BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | ZBBX-205 | ENST00000455345 | 3185 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | CYLC2-202 | ENST00000487798 | 2053 nt | APPRIS P1 TSL 5 BASIC | 1.43 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL354685.2-201 | ENST00000448218 | 1447 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | FSIP2-202 | ENST00000424728 | 20788 nt | APPRIS P2 TSL 5 BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | ZNF679-201 | ENST00000255746 | 1297 nt | APPRIS P1 TSL 1 (best) BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | SNORD48-201 | ENST00000364953 | 64 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-1-201 | ENST00000383898 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-42P-201 | ENST00000384165 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-36P-201 | ENST00000384172 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-4P-201 | ENST00000384205 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-5P-201 | ENST00000384238 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-3P-201 | ENST00000384314 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-2-201 | ENST00000384627 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-9-201 | ENST00000384776 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-33P-201 | ENST00000384793 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | SNORA40.4-201 | ENST00000390971 | 128 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC010731.2-201 | ENST00000415275 | 440 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | GS1-594A7.3-201 | ENST00000421585 | 574 nt | TSL 2 BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RAC1P6-201 | ENST00000423911 | 575 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LINC01953-201 | ENST00000426870 | 717 nt | TSL 5 BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC093423.2-201 | ENST00000429074 | 437 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL138830.2-202 | ENST00000446358 | 786 nt | TSL 2 BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL136380.1-201 | ENST00000447970 | 162 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LINC02540-201 | ENST00000455554 | 570 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | SNORD97-201 | ENST00000459187 | 142 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LAMTOR3P2-201 | ENST00000504479 | 232 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC130371.1-204 | ENST00000576197 | 401 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-6P-201 | ENST00000606623 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | MIR6078-201 | ENST00000611069 | 100 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL136313.1-201 | ENST00000624804 | 202 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | ATM-228 | ENST00000639240 | 498 nt | TSL 5 BASIC | 1.42 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | U3.13-201 | ENST00000364804 | 214 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-53P-201 | ENST00000365367 | 106 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | KIF27-203 | ENST00000376347 | 1030 nt | TSL 5 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL033519.2-201 | ENST00000403958 | 392 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC078974.1-201 | ENST00000411597 | 223 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LINC00397-201 | ENST00000422074 | 344 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | U51244.1-201 | ENST00000423120 | 374 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL157786.1-206 | ENST00000424422 | 551 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL391336.1-201 | ENST00000424678 | 484 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC009313.1-201 | ENST00000425470 | 503 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL591704.1-201 | ENST00000432574 | 275 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | MTND4P25-201 | ENST00000441039 | 533 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL078601.1-201 | ENST00000444542 | 271 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | GPX5-203 | ENST00000469384 | 428 nt | TSL 1 (best) BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RPL7P18-201 | ENST00000478965 | 734 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC011005.2-201 | ENST00000487324 | 359 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | HMGB1P35-201 | ENST00000503360 | 598 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | SMAD1-AS2-201 | ENST00000508936 | 1090 nt | TSL 1 (best) BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC117460.1-201 | ENST00000508964 | 467 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | SNORA4.4-201 | ENST00000515921 | 135 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | SNORA25.11-201 | ENST00000515935 | 105 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | RNU6-572P-201 | ENST00000516724 | 80 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC009902.1-201 | ENST00000519351 | 183 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | MTND1P36-201 | ENST00000522384 | 936 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC027018.1-202 | ENST00000534723 | 383 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC025575.1-201 | ENST00000548497 | 544 nt | TSL 4 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC079035.1-201 | ENST00000551713 | 848 nt | TSL 1 (best) BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | FAM96A-206 | ENST00000559950 | 561 nt | TSL 2 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AL031716.1-201 | ENST00000569106 | 530 nt | TSL 5 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC136618.2-201 | ENST00000575091 | 400 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC243960.4-201 | ENST00000600532 | 288 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | AC018645.2-201 | ENST00000609151 | 472 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | MIR6734-201 | ENST00000621166 | 68 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | LINC01359-207 | ENST00000634799 | 487 nt | TSL 5 BASIC | 1.41 | □□□□□ -2.18 | | |
| HES3 | Q5TGS1 | SLC25A46-206 | ENST00000509432 | 1596 nt | TSL 2 BASIC | 1.41 | □□□□□ -2.18 | | |