Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC005261.5-201ENST00000596280 355 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 CYP2C61P-201ENST00000604072 290 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 AC021646.1-201ENST00000605469 484 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 AC108706.1-201ENST00000611053 297 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 AL445264.1-201ENST00000621719 171 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 AC120349.2-201ENST00000625002 298 ntBASIC0.9□□□□□ -2.27
CHD3Q12873 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.9□□□□□ -2.27
CHD3Q12873 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.9□□□□□ -2.27
CHD3Q12873 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
CHD3Q12873 RNU6-516P-201ENST00000411381 104 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 ZNF736P7Y-201ENST00000425158 820 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 AC092648.1-201ENST00000425870 423 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 AL590365.1-201ENST00000450788 243 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 AC010409.1-201ENST00000487382 476 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.89□□□□□ -2.27
CHD3Q12873 AC034114.1-201ENST00000520293 285 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC0.89□□□□□ -2.27
CHD3Q12873 DEFB131D-201ENST00000526803 184 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 VBP1-203ENST00000535916 944 ntTSL 2 BASIC0.89□□□□□ -2.27
CHD3Q12873 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CHD3Q12873 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.89□□□□□ -2.27
CHD3Q12873 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC0.89□□□□□ -2.27
CHD3Q12873 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC0.89□□□□□ -2.27
CHD3Q12873 AC239868.4-201ENST00000608318 671 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 SNORD114-23-201ENST00000363536 72 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 RNU6-716P-201ENST00000365621 103 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 RNA5SP212-201ENST00000391223 107 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 BTF3L4P2-201ENST00000392798 346 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 RNU2-7P-201ENST00000410794 178 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 RPL36AP53-201ENST00000432891 316 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 BRK1P2-201ENST00000442875 223 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 MTND1P31-201ENST00000449206 961 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 MTND2P24-201ENST00000453434 806 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 AL583843.1-201ENST00000456070 346 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 AC023194.1-201ENST00000493084 308 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.89□□□□□ -2.27
CHD3Q12873 MIR1273G-201ENST00000577677 100 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 AL603758.1-201ENST00000618654 241 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.89□□□□□ -2.27
CHD3Q12873 AC107982.1-201ENST00000507171 1300 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.88□□□□□ -2.27
CHD3Q12873 FTH1P15-201ENST00000406984 280 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC0.88□□□□□ -2.27
CHD3Q12873 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD3Q12873 AC244035.1-201ENST00000430042 390 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 ELOCP30-201ENST00000447108 299 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 RPL39P29-201ENST00000447779 157 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD3Q12873 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.88□□□□□ -2.27
CHD3Q12873 AL441985.1-201ENST00000457727 251 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 AC114801.2-201ENST00000503825 781 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.88□□□□□ -2.27
CHD3Q12873 MRPS33P3-201ENST00000513456 322 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 RNU6-751P-201ENST00000516382 101 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 SNORA31.16-201ENST00000516773 139 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 RNA5SP137-201ENST00000516833 135 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD3Q12873 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.88□□□□□ -2.27
CHD3Q12873 SNRPGP17-201ENST00000603780 214 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 AL590095.2-201ENST00000604136 117 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 SNORD114-21-201ENST00000606412 72 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 AC012467.1-201ENST00000607740 256 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 AP005229.2-201ENST00000609980 697 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 AL357080.1-201ENST00000617394 239 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 AC024581.2-201ENST00000619986 252 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 AC104985.3-201ENST00000623479 597 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.88□□□□□ -2.27
CHD3Q12873 AC018630.2-201ENST00000534866 2403 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 FARSBP1-201ENST00000435808 1778 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 RNA5SP457-201ENST00000363657 124 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 RNU6-1280P-201ENST00000365211 107 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 RNU6-952P-201ENST00000391164 108 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD3Q12873 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD3Q12873 BX119904.4-201ENST00000424402 301 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.88□□□□□ -2.27
CHD3Q12873 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD3Q12873 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD3Q12873 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD3Q12873 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.88□□□□□ -2.27
CHD3Q12873 RRN3P3-201ENST00000549207 578 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 HSPE1P4-201ENST00000550617 308 ntBASIC0.88□□□□□ -2.27
CHD3Q12873 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CHD3Q12873 RNU6-942P-201ENST00000363002 107 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 RNU6-560P-201ENST00000364007 108 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 Y_RNA.255-201ENST00000364581 97 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 RNU1-39P-201ENST00000383897 165 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 MTCO1P56-201ENST00000401674 224 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.87□□□□□ -2.27
CHD3Q12873 AL160275.3-201ENST00000423876 471 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 AL596276.1-201ENST00000434465 418 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 RPL18AP17-201ENST00000455326 198 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 MEMO1P3-201ENST00000459811 302 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 AC008379.1-201ENST00000463655 464 ntBASIC0.87□□□□□ -2.27
CHD3Q12873 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.87□□□□□ -2.27
CHD3Q12873 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.87□□□□□ -2.27
CHD3Q12873 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms