Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AC027335.2-201ENST00000624030 375 ntBASIC0.66□□□□□ -2.3
HIST1H1AQ02539 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.65□□□□□ -2.31
HIST1H1AQ02539 RNU6-223P-201ENST00000362830 107 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 SNORD114-19-201ENST00000363072 75 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 Y_RNA.234-201ENST00000364409 97 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 Y_RNA.255-201ENST00000364581 97 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 RNU6-1274P-201ENST00000384557 107 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 RNU6-1300P-201ENST00000391046 108 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 RN7SKP61-201ENST00000410642 295 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AL139421.1-201ENST00000423010 169 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AL121578.1-201ENST00000428051 892 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 USP9YP22-201ENST00000438971 294 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AC020550.1-201ENST00000447385 163 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 RPL37P6-201ENST00000460682 294 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AC108729.3-201ENST00000513484 108 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AC018630.3-201ENST00000542637 96 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AL359821.1-201ENST00000605519 182 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AC004908.3-201ENST00000610248 625 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 TUG1_2.1-201ENST00000614234 87 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AC013470.4-201ENST00000619978 986 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AL359757.2-201ENST00000624309 274 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AL136313.1-201ENST00000624804 202 ntBASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC0.65□□□□□ -2.31
HIST1H1AQ02539 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 MIR532-201ENST00000385025 91 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 MIR100-201ENST00000385259 80 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 RNU2-64P-201ENST00000411315 191 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 CR848007.2-201ENST00000424918 787 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 GTF2IP3-201ENST00000433887 494 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 GTF2IP12-201ENST00000456547 356 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AC023194.1-201ENST00000493084 308 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 SCARNA16.2-201ENST00000516520 172 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AC019176.1-201ENST00000518519 225 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AC104229.1-201ENST00000561364 255 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AP001004.1-201ENST00000582468 324 ntBASIC0.64□□□□□ -2.31
HIST1H1AQ02539 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.64□□□□□ -2.31
HIST1H1AQ02539 FARSBP1-201ENST00000435808 1778 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
HIST1H1AQ02539 RNU6-112P-201ENST00000363599 104 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 SNORD114-27-201ENST00000363766 70 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 RNU6-392P-201ENST00000364926 101 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 MIR515-2-201ENST00000384883 83 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 MIR515-1-201ENST00000384884 83 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AC006461.1-201ENST00000412637 326 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 MTND1P21-201ENST00000412991 285 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AL606490.4-201ENST00000423117 127 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AL589872.1-201ENST00000426602 288 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AC007000.2-201ENST00000442564 487 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC0.63□□□□□ -2.31
HIST1H1AQ02539 ARL2BPP4-201ENST00000506854 471 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 RNU6-351P-201ENST00000516097 100 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 RNU2-53P-201ENST00000516257 147 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AL731537.2-201ENST00000561565 951 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 MIR4698-201ENST00000577795 80 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AP005136.1-201ENST00000579765 429 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 MIR4666A-201ENST00000580160 79 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AC005786.1-201ENST00000588553 154 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AC012065.4-201ENST00000602445 679 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 AL022345.2-201ENST00000606307 135 ntBASIC0.63□□□□□ -2.31
HIST1H1AQ02539 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.62□□□□□ -2.31
HIST1H1AQ02539 AC008163.1-202ENST00000636004 2889 ntBASIC0.62□□□□□ -2.31
HIST1H1AQ02539 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
HIST1H1AQ02539 SNORA25-201ENST00000384384 134 ntBASIC0.62□□□□□ -2.31
HIST1H1AQ02539 RNU6-160P-201ENST00000384591 107 ntBASIC0.62□□□□□ -2.31
HIST1H1AQ02539 MRPL35P1-201ENST00000404272 572 ntBASIC0.62□□□□□ -2.31
HIST1H1AQ02539 USP9YP33-201ENST00000412220 421 ntBASIC0.62□□□□□ -2.31
HIST1H1AQ02539 TAF13P2-201ENST00000416876 286 ntBASIC0.62□□□□□ -2.31
HIST1H1AQ02539 TOMM22P6-201ENST00000465035 409 ntBASIC0.62□□□□□ -2.31
HIST1H1AQ02539 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.62□□□□□ -2.31
HIST1H1AQ02539 HMGN1P7-201ENST00000491722 313 ntBASIC0.62□□□□□ -2.31
HIST1H1AQ02539 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC0.62□□□□□ -2.31
HIST1H1AQ02539 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.62□□□□□ -2.31
HIST1H1AQ02539 AC103851.1-201ENST00000506833 274 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms